Gene detail

Detail information of GWHGAAZE015277

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011005446.1	0	PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Populus euphratica]
Swissprot	tr\|Q38953\|DHX8_ARATH	0	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBL	tr\|A0A068U4C9\|A0A068U4C9_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_9 {ECO:0000313\|EMBL:CDP03152.1}
TAIR10	AT3G26560.1	8E-170	ATP-dependent RNA helicase, putative

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	29444739	29447012	+
GWHAAZE00000004	mRNA	29444739	29447012	+
GWHAAZE00000004	exon	29444739	29445208	+
GWHAAZE00000004	exon	29446619	29447012	+
GWHAAZE00000004	CDS	29444739	29445208	+
GWHAAZE00000004	CDS	29446619	29447012	+

Transcript Sequence
>GWHTAAZE015293 ATGAAAGCCATGGGAATAAATGACCTTTTGTCTTTCGATTTTATGGACCCACCCTCTCCTCAAGCTCTTATATCTGCAATGGAACAACTCTACAGTCTAGGAGCTCTGGATGAGGAGGGGCTTCTTACCAAATTGGGCAGGAAAATGGCAGAATTTCCACTGGACCCTCCGTTGTCAAAGATGCTGCTTGCCAGTGTAGACCTTGGTTGTAGTGATGAGATTTTGACTATAATTGCAATGATTCAGACCGGTAATATCTTCTACAGGCCTAGGGAGAAACAAGCTCAAGCAGATCAAAAGAGGGCTAAGTTTTTCCAGCCTGAAGGAGACCATCTGACCTTACTGGCTGTTTATGAGGCTTGGAAAGCTAAAAACTTTTCTGGGCCGTGGTGTTTTGAAAATTTTGTTCAGTCTCGGTCATTAAGGAGAGCACAAGATGTAAGGAAACAGCTTCTCTCGATCATGGACAAGTACAAATTGGATGTTGTGAGTGCGGGGAAAAATTTCACAAAGATAAGGAAGGCAATAACAGCTGGATTCTTCTTTCACGCAGGTAGAAAGGATCCCCAAGAGGGTTACAGAACCCTAGTTGAGAACCAACCGGTTTATATTCACCCAAGCAGTGCCCTTTTCCAAAGACAACCAGATTGGGTCATTTACCACGAGCTAGTAATGACTACAAAGGAGTACATGCGCGAGGTCACTGTTGTGGACCCCAAATGGCTCGTTGAACTGGCACCCAGGTTCTTCAAAGTATCTGACCCCACGAAAATGAGCAAGCGAAAGCGTCAAGAACGGATTGAGCCCTTATACGATAGATACCATGAGCCTAACTCATGGCGTTTGAGTAAAAGACGCGCTTGA

Network for GWHGAAZE015277

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04408.24	HA2	26	114	1.30E-25
PF07717.17	OB_NTP_bind	172	247	4.10E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12818	DHX8, PRP22	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0004386	molecular_function	helicase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.778
	SRR3591706	second leaf	11.466
	SRR3591707	mature leaf	14.379
	SRR3591708	Shoot apex	22.752
	SRR3591709	Stem	19.781
	SRR3591710	White floral bud	25.897
	SRR3591711	White flower	35.317
	SRR3591712	Green floral bud	26.322
	SRR3591713	Yellow flower	31.584
SRP173429	SRR8316895	Juvenile bud stage	11.467
	SRR8316896	Juvenile bud stage	18.565
	SRR8316897	Juvenile bud stage	9.447
	SRR8316894	Third green stage	8.727
	SRR8316900	Third green stage	21.757
	SRR8316901	Third green stage	24.355
	SRR8316898	Complete white stage	6.086
	SRR8316899	Complete white stage	25.089
	SRR8316903	Complete white stage	19.549
	SRR8316902	Silver flowering stage	14.747
	SRR8316904	Silver flowering stage	18.277
	SRR8316905	Silver flowering stage	8.793
	SRR8316906	Gold flowering stage	31.140
	SRR8316907	Gold flowering stage	34.903
	SRR8316908	Gold flowering stage	32.558
SRP132670	SRR6706286	Control	13.445
	SRR6706287	Light intensity 50%	13.314
	SRR6706288	Light intensity 20%	13.255
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.098
	CNS0095593	Slightly white alabastrum(diploid) 2	20.863
	CNS0095594	Slightly white alabastrum(diploid) 3	16.550
	CNS0095595	Whole white alabastrum(diploid) 2	20.694
	CNS0095596	Whole white alabastrum(diploid) 3	16.038
	CNS0095597	Whole white alabastrum(diploid) 4	17.471
	CNS0095598	Silvery flower (diploied) 1	21.387
	CNS0095599	Silvery flower (diploied) 2	15.128
	CNS0095600	Silvery flower (diploied) 3	26.296
	CNS0095601	Golden flower (diploid) 1	28.389
	CNS0095602	Golden flower (diploid) 2	31.777
	CNS0095603	Golden flower (diploid) 3	28.864
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.640
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.883
	CNS0095606	Slightly white alabastrum(tetraploid) 3	28.291
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.812
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.590
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.302
	CNS0095610	Silvery flower (tetraploid) 1	34.463
	CNS0095611	Silvery flower (tetraploid) 2	32.855
	CNS0095612	Silvery flower (tetraploid) 3	29.037
	CNS0095613	Golden flower (tetraploid) 1	31.351
	CNS0095614	Golden flower (tetraploid) 2	38.957
	CNS0095615	Golden flower (tetraploid) 3	38.935
CRA001975	CRR073297	Stem 1	19.887
	CRR073298	Stem 2	18.845
	CRR073299	Stem 3	15.494
	CRR073300	Leaf 1	21.049
	CRR073301	Leaf 2	19.891
	CRR073302	Leaf 3	13.243
	CRR073303	Juvenile bud 1	20.197
	CRR073304	Juvenile bud 2	16.336
	CRR073305	Juvenile bud 3	25.428
	CRR073306	Third green 1	13.460
	CRR073307	Third green 2	11.426
	CRR073308	Third green 3	16.031
	CRR073309	Second white 1	14.643
	CRR073310	Second white 2	18.105
	CRR073311	Second white 3	14.980
	CRR073312	Silver flowering 1	18.788
	CRR073313	Silver flowering 2	18.273
	CRR073314	Silver flowering 3	14.609
	CRR073315	Gold flowering 1	12.508
	CRR073316	Gold flowering 2	13.455
	CRR073317	Gold flowering 3	8.854
	CRR073318	Tawny withering 1	18.863
	CRR073319	Tawny withering 2	19.182
	CRR073320	Tawny withering 3	17.017