Gene detail

Detail information of GWHGAAZE015276

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009631648.1	PREDICTED: LOW QUALITY PROTEIN: probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Nicotiana tomentosiformis]
Swissprot	tr\|Q38953\|DHX8_ARATH	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBL	tr\|K4B3W2\|K4B3W2_SOLLC	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g110990.2.1}
TAIR10	AT3G26560.1	ATP-dependent RNA helicase, putative

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	29441945	29444677	+
GWHAAZE00000004	mRNA	29441945	29444677	+
GWHAAZE00000004	exon	29441945	29442340	+
GWHAAZE00000004	exon	29442707	29444677	+
GWHAAZE00000004	CDS	29441945	29442340	+
GWHAAZE00000004	CDS	29442707	29444677	+

Transcript Sequence
>GWHTAAZE015292 ATGGCTTCTGAGGTTAAAGAGGGAGGATTGAAGAAACTCGAGTACCTTTCACTTGTATCTAAGGTCTGTACGGAACTAGAGTCTCATCTAGGGTTTGGTGACAAGGTTTTGGCCGAATTCATAACAGAATTGGGCCGAAACTGTCAAAATGTTGATGAATTCGATGCTAAATTGAAGGAAAACGGAGCCGAGATGCCCGATTACTTTGTTCGCACTTTGTTAAAGATAATTCACGCGATTTTGCCCCCGAAATTGGATTCGAAGGTGAAGGGGCAGAAGAAGGATGAATCCGAGGGTAAATCGAAGTTTCCGGCTTTGAATATAGAGGATGGAAGACAGAGAGTGAAGGAATTGGAGAGAGAGATTGAGATGGAAATTAAGGAGAGGGGGAGGAAACAGCACTCGGATGAACCGGAGCTTTATATGGTGTATAAGGGGAGGGTTTCGAGGGTGATGGACACGGGGTGCTTTGTTCAGCTCAGTGATATTAGGGGTAAAGAAGGTTTGGTTCATGTCTCACAGATGGCAACTAGGAGGGTTACTAGTGCTAAAGATCTTGTGAAGAGGGATCAAGAGGTTTTTGTGAAGGTAATTTCGGTTTCGGGTCAGAAGTTGAGTCTTTCAATGAGGGACGTTGATCAGCATACTGGGAAGGATTTGCTACCATTGAAGAAGAACTCAGGGGATGATTCGTTAAGGACAAATCCTTCTGGGTTGAACAATGGGGGGCCTATGACTAGGACAGGTCTTTCGGGGATTAGAATCACTGACGAGGATGTTACCGTCCCATCACGAAGGCCATTGAAGAGAATGAGTTCGCCCGAGATATGGGAAGCAAAACAGCTGATTGCTTCCGGTGTTTTGAGTGTCAAAGAGTACCCAATGTTTGATGAAGAAACTGAAGGGAATGGAATGATGTATCAAGAAGAGGGTGCTGAGGAAGAACTTGAGATTGAGATGAATGAAGATGAACCGGCTTTCTTGCATGGTCAGAGTCGATACTCTACAGACATGTCACCTGTTAAGATCTTCAAGAATCCCGAGGGGTCCTTGAGCCGTGCAGCAGCGCTTCAATCGGCTCTCATAAAAGAGAGAAGAGAAGTAAGGGAACAGCAGCAAAGAACAATGCTTGATTCTATACCGAAAGATCTCAATCGGCCTTGGGAAGACCCAATGCCCGAAACAGGTGAGAGGCATCTTGCACAGGAGCTGAGAGGTGTTGGTTTGTCTGCCTACGACATGCCTGAATGGAAAAAGGATGCTTTTGGCAAATCACTGACTTTTGGGCAAAGGTCAAAGCTTTCGATCCAAGAACAAAGGCAGAGCTTGCCCATTTACAAATTAAAAAAGGAATTGGTTCAGGCTGTACATGATAATCAGGTTCTGGTTGTTATTGGTGAGACGGGTTCGGGGAAGACGACCCAGGTGACTCAGTACCTAGCTGAAGCGGGTTATACTACCAAGGGTAAGATTGGGTGTACACAGCCCCGTAGGGTGGCGGCAATGTCGGTGGCCAAGAGGGTTGCTGAAGAGTTTGGGTGTCGTCTAGGGGAGGAAGTCGGATATGCCATTCGTTTTGAGGATTGTACTGGACCCGAAACTGTGATCAAGTATATGACTGACGGTATGCTTATGAGGGAGATTCTGATTGATGAGGATCTATCTCAATATTCAGTTGTAATGCTTGACGAAGCTCATGAGAGGACAATCCACACTGATGTCCTCTTTGGGTTACTAAAACAGCTCGTGAAAAGGAGACCCGACCTTCGTTTGATTGTAACATCAGCTACTTTGGATGCAGAGAAGTTTTCTGGTTATTTCTTTAACTGCAATATCTTCACCATTCCTGGAAGAACTTATCCCGTTGAGATACTCTACACAAAGCAGCCAGAGAGTGACTATCTTGATGCAGCCCTAATTACAGTCATGCAGATCCATTTGACCGAACCCGAAGGTGACATCCTTGTCTTCTTGACTGGTCAAGAGGAGATTGATCATGCGTGCCAGTGTCTTTACGAGAGGATGAAAGGGCTAGGTAGAAATGTTCCTGAACTGATTATTTTACCAGTCTACAGTGCCCTACCTAGTGAAATGCAATCTAGAATTTTCGAACCTGCCCCTCCAGGGAAGAGGAAAGTGGTGGTTGCCACAAATATAGCTGAAGCTTCTTTGACAATTGATGGGATATATTATGTCATCGATCCGGGGTTTGCAAAGCAAAATGTGTACAACCCTAAACAGGGTCTCGATTCATTGGTCATAACTCCCATCTCACAAGCATCAGCGAAACAACGAGCTGGTCGTGCTGGGAAGAACAGGACCAGGAAAGTGTTATCGCCTTTACACCGAGAGTGCTTTCCACAATGA

Network for GWHGAAZE015276

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00575.24	S1	142	208	2.90E-10
PF00270.30	DEAD	450	599	8.80E-08
PF00271.32	Helicase_C	643	771	1.80E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12818	DHX8, PRP22	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.553
	SRR3591706	second leaf	9.941
	SRR3591707	mature leaf	8.464
	SRR3591708	Shoot apex	9.848
	SRR3591709	Stem	11.132
	SRR3591710	White floral bud	18.489
	SRR3591711	White flower	27.970
	SRR3591712	Green floral bud	13.759
	SRR3591713	Yellow flower	23.224
SRP173429	SRR8316895	Juvenile bud stage	6.974
	SRR8316896	Juvenile bud stage	12.668
	SRR8316897	Juvenile bud stage	5.282
	SRR8316894	Third green stage	5.841
	SRR8316900	Third green stage	15.551
	SRR8316901	Third green stage	12.927
	SRR8316898	Complete white stage	5.223
	SRR8316899	Complete white stage	15.460
	SRR8316903	Complete white stage	13.996
	SRR8316902	Silver flowering stage	8.334
	SRR8316904	Silver flowering stage	15.954
	SRR8316905	Silver flowering stage	7.621
	SRR8316906	Gold flowering stage	23.897
	SRR8316907	Gold flowering stage	22.141
	SRR8316908	Gold flowering stage	22.787
SRP132670	SRR6706286	Control	14.949
	SRR6706287	Light intensity 50%	16.508
	SRR6706288	Light intensity 20%	18.208
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.591
	CNS0095593	Slightly white alabastrum(diploid) 2	5.959
	CNS0095594	Slightly white alabastrum(diploid) 3	5.653
	CNS0095595	Whole white alabastrum(diploid) 2	7.189
	CNS0095596	Whole white alabastrum(diploid) 3	5.766
	CNS0095597	Whole white alabastrum(diploid) 4	5.166
	CNS0095598	Silvery flower (diploied) 1	10.688
	CNS0095599	Silvery flower (diploied) 2	8.664
	CNS0095600	Silvery flower (diploied) 3	24.581
	CNS0095601	Golden flower (diploid) 1	7.994
	CNS0095602	Golden flower (diploid) 2	25.821
	CNS0095603	Golden flower (diploid) 3	26.370
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.952
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.522
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.564
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.800
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.760
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.573
	CNS0095610	Silvery flower (tetraploid) 1	32.016
	CNS0095611	Silvery flower (tetraploid) 2	28.070
	CNS0095612	Silvery flower (tetraploid) 3	24.850
	CNS0095613	Golden flower (tetraploid) 1	15.656
	CNS0095614	Golden flower (tetraploid) 2	28.825
	CNS0095615	Golden flower (tetraploid) 3	34.016
CRA001975	CRR073297	Stem 1	19.232
	CRR073298	Stem 2	18.880
	CRR073299	Stem 3	16.121
	CRR073300	Leaf 1	21.821
	CRR073301	Leaf 2	17.577
	CRR073302	Leaf 3	14.342
	CRR073303	Juvenile bud 1	18.356
	CRR073304	Juvenile bud 2	14.557
	CRR073305	Juvenile bud 3	25.203
	CRR073306	Third green 1	14.094
	CRR073307	Third green 2	9.867
	CRR073308	Third green 3	15.284
	CRR073309	Second white 1	12.605
	CRR073310	Second white 2	16.684
	CRR073311	Second white 3	22.714
	CRR073312	Silver flowering 1	20.365
	CRR073313	Silver flowering 2	18.831
	CRR073314	Silver flowering 3	19.209
	CRR073315	Gold flowering 1	5.625
	CRR073316	Gold flowering 2	13.750
	CRR073317	Gold flowering 3	6.934
	CRR073318	Tawny withering 1	13.059
	CRR073319	Tawny withering 2	11.274
	CRR073320	Tawny withering 3	11.087