Gene detail

Detail information of GWHGAAZE015273

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002279464.2	0	PREDICTED: DNA repair protein recA homolog 3, mitochondrial [Vitis vinifera]
Swissprot	tr\|Q9ZUP2\|RECA3_ARATH	0	DNA repair protein recA homolog 3, mitochondrial (Precursor)
trEMBL	tr\|D7TB64\|D7TB64_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI27899.3}
TAIR10	AT2G19490.1	3E-155	recA DNA recombination family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	29393476	29401014	+
GWHAAZE00000004	mRNA	29393476	29401014	+
GWHAAZE00000004	exon	29393476	29393703	+
GWHAAZE00000004	exon	29395253	29395310	+
GWHAAZE00000004	exon	29396306	29396523	+
GWHAAZE00000004	exon	29397201	29397288	+
GWHAAZE00000004	exon	29397967	29398139	+
GWHAAZE00000004	exon	29398583	29398729	+
GWHAAZE00000004	exon	29399098	29399232	+
GWHAAZE00000004	exon	29400616	29401014	+
GWHAAZE00000004	five_prime_UTR	29393476	29393643	+
GWHAAZE00000004	CDS	29393644	29393703	+
GWHAAZE00000004	CDS	29395253	29395310	+
GWHAAZE00000004	CDS	29396306	29396523	+
GWHAAZE00000004	CDS	29397201	29397288	+
GWHAAZE00000004	CDS	29397967	29398139	+
GWHAAZE00000004	CDS	29398583	29398729	+
GWHAAZE00000004	CDS	29399098	29399232	+
GWHAAZE00000004	CDS	29400616	29401014	+

Transcript Sequence
>GWHTAAZE015289 CCCTTAAACCCTAACCAAACCCTCTACGCTTCTCTCTCTTCTCTCTCTAAAATTTGTTCCTTCTCTGTTTATATATAACGAATTGAAACAACCTTTTGATCTCAACATATTCAGATTTCACTTCCCAACCATCTATTGGCCTTCGAATTTATACGAAAATCTATCTAAATGGCGAGGCAGATTCTTCGCAACGCTTCATTTCTCAAACACTATCTACTCTCGCCACAGGGTGCTAGGAAAGGGTTATTGGGAACATCCTCCCAGCTAAGCAGCTTTTCGTCTAAAGCTAAAAAGAAATCGAAGTCAGATGGGAGCGATTCTGGTGAAGAGAACATATCCAAGAAAGATCTGGCTCTACAGCAAGCACTGGATCAGATCACCACCGCATTTGGGAAGGGATCTATCATGTGGCTTGGTCGGTCTGTTGCTTACAAACAAGTTCCAGTTGTGTCTACTGGATCTTTTGCTTTAGATATAGCACTGGGAATTGGTGGACTTCCAAAGGGGCGTGTGGTGGAGATATATGGTCCGGAAGCTTCTGGGAAAACAACGCTTGCTTTACATGTAATTGCCGAAGCACAAAAGCAAGGAGGTTACTGTGTTTTTATCGATGCTGAGCATGCTCTTGATCCGGCACTAGCTGAGGCTATTGGAGTAAACACGGAAAATTTGCTCCTCTCACAACCAGATTGTGGTGAACAAGCACTCAGTCTTGTGGATACCATAATCCGGAGTGGGTCAGTTGACGTTGTCGTTGTGGACAGTGTAGCTGCCCTGGTGCCTAAAGGTGAACTTGATGGTGAGATGGGTGATGCCCACATGGCAATGCAAGCTAGGCTTATGAGCCAGGCACTACGCAAATTGAGCCATTCTTTATCTTTGTCACAAACTATATTGATCTTTATAAATCAGGTGAGGTCAAAGCTGTCCACTTTTGGAGGATTTGGTGGGCCCACTGAAGTTACATGTGGTGGTAACGCTTTGAAGTTCTATGCTTCCATGCGCCTAAATATTAGGAGAACTGGGCTTGTAAAGAAGGGAGAAGAGACTATTGGAAGTCAAGTTCTTGTGAAGATTGTGAAGAACAAACACGCCCCTCCATTTAGAACGGCACAATTTGAGCTGGAATTTGGCAAGGGAATATGCCGAGAATCGGAGCTCATAGAATTGGGCGCCAAACACAAGTTCATTACGAAAAGTGGAGGCGGTTATTACAGCATGAATGGTCAGAATTTCCGTGGCAAGGACACCATAAAAAATTACCTCGTTGAGAATACAAGTGTACGAGAGGAACTTATTATGAAGCTGAGAGAGAAGCTGATCGATGCTGGGCCAGAAAAGGAAACGGGGGCTGAACCCGGGGCTGTAGATGATGTTGCTCTCACCGAAGACGTTGTTTCAAGCGATACAACCGATGAAGAAGTAGTGAGCGCAGTTGAGGCTTGA

Network for GWHGAAZE015273

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00154.22	RecA	62	325	1.70E-119

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03553	recA	Homologous recombination	map03440

Gene Ontology

GO term	Ontology	Name
GO:0006281	biological_process	DNA repair
GO:0006259	biological_process	DNA metabolic process
GO:0003697	molecular_function	single-stranded DNA binding
GO:0005524	molecular_function	ATP binding
GO:0003677	molecular_function	DNA binding
GO:0008094	molecular_function	DNA-dependent ATPase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.589
	SRR3591706	second leaf	5.908
	SRR3591707	mature leaf	7.298
	SRR3591708	Shoot apex	17.780
	SRR3591709	Stem	10.103
	SRR3591710	White floral bud	6.761
	SRR3591711	White flower	12.705
	SRR3591712	Green floral bud	11.478
	SRR3591713	Yellow flower	9.153
SRP173429	SRR8316895	Juvenile bud stage	8.973
	SRR8316896	Juvenile bud stage	9.991
	SRR8316897	Juvenile bud stage	4.966
	SRR8316894	Third green stage	3.549
	SRR8316900	Third green stage	12.430
	SRR8316901	Third green stage	8.462
	SRR8316898	Complete white stage	2.109
	SRR8316899	Complete white stage	13.040
	SRR8316903	Complete white stage	4.147
	SRR8316902	Silver flowering stage	5.226
	SRR8316904	Silver flowering stage	7.502
	SRR8316905	Silver flowering stage	4.161
	SRR8316906	Gold flowering stage	14.120
	SRR8316907	Gold flowering stage	11.686
	SRR8316908	Gold flowering stage	9.179
SRP132670	SRR6706286	Control	12.619
	SRR6706287	Light intensity 50%	13.254
	SRR6706288	Light intensity 20%	14.960
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.211
	CNS0095593	Slightly white alabastrum(diploid) 2	7.847
	CNS0095594	Slightly white alabastrum(diploid) 3	7.998
	CNS0095595	Whole white alabastrum(diploid) 2	6.328
	CNS0095596	Whole white alabastrum(diploid) 3	7.011
	CNS0095597	Whole white alabastrum(diploid) 4	4.490
	CNS0095598	Silvery flower (diploied) 1	7.560
	CNS0095599	Silvery flower (diploied) 2	6.123
	CNS0095600	Silvery flower (diploied) 3	7.912
	CNS0095601	Golden flower (diploid) 1	4.855
	CNS0095602	Golden flower (diploid) 2	5.398
	CNS0095603	Golden flower (diploid) 3	5.751
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.868
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.717
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.113
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.085
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.209
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.757
	CNS0095610	Silvery flower (tetraploid) 1	9.365
	CNS0095611	Silvery flower (tetraploid) 2	9.813
	CNS0095612	Silvery flower (tetraploid) 3	7.438
	CNS0095613	Golden flower (tetraploid) 1	4.614
	CNS0095614	Golden flower (tetraploid) 2	7.361
	CNS0095615	Golden flower (tetraploid) 3	7.423
CRA001975	CRR073297	Stem 1	17.204
	CRR073298	Stem 2	14.959
	CRR073299	Stem 3	19.383
	CRR073300	Leaf 1	12.208
	CRR073301	Leaf 2	11.492
	CRR073302	Leaf 3	12.854
	CRR073303	Juvenile bud 1	12.695
	CRR073304	Juvenile bud 2	8.207
	CRR073305	Juvenile bud 3	17.541
	CRR073306	Third green 1	5.728
	CRR073307	Third green 2	3.802
	CRR073308	Third green 3	6.307
	CRR073309	Second white 1	4.809
	CRR073310	Second white 2	7.577
	CRR073311	Second white 3	4.535
	CRR073312	Silver flowering 1	4.014
	CRR073313	Silver flowering 2	2.521
	CRR073314	Silver flowering 3	2.440
	CRR073315	Gold flowering 1	9.964
	CRR073316	Gold flowering 2	11.440
	CRR073317	Gold flowering 3	11.543
	CRR073318	Tawny withering 1	13.331
	CRR073319	Tawny withering 2	8.200
	CRR073320	Tawny withering 3	16.403