Detail information of GWHGAAZE015267


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI27895.31.23421E-72unnamed protein product [Vitis vinifera]
Swissprottr|Q9LTS7|C3H65_ARATH2E-40Zinc finger CCCH domain-containing protein 65
trEMBLtr|D7TB60|D7TB60_VITVI5E-73Putative uncharacterized protein {ECO:0000313|EMBL:CBI27895.3}
TAIR10AT5G56930.16E-38CCCH-type zinc finger family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene2926562629271644-
GWHAAZE00000004mRNA2926562629271644-
GWHAAZE00000004exon2926562629266459-
GWHAAZE00000004exon2926707929267222-
GWHAAZE00000004exon2926821829268268-
GWHAAZE00000004exon2926837729268508-
GWHAAZE00000004exon2926970529269773-
GWHAAZE00000004exon2926994929270023-
GWHAAZE00000004exon2927086429271262-
GWHAAZE00000004exon2927138729271644-
GWHAAZE00000004CDS2927138729271644-
GWHAAZE00000004CDS2927086429271262-
GWHAAZE00000004CDS2926994929270023-
GWHAAZE00000004CDS2926970529269773-
GWHAAZE00000004CDS2926837729268508-
GWHAAZE00000004CDS2926821829268268-
GWHAAZE00000004CDS2926707929267222-
GWHAAZE00000004CDS2926562629266459-
Transcript Sequence

Network for GWHGAAZE015267

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC3H

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046872molecular_functionmetal ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.148
SRR3591706second leaf8.381
SRR3591707mature leaf12.222
SRR3591708Shoot apex12.939
SRR3591709Stem13.224
SRR3591710White floral bud14.479
SRR3591711White flower16.600
SRR3591712Green floral bud14.146
SRR3591713Yellow flower15.440
SRP173429 SRR8316895Juvenile bud stage 7.536
SRR8316896Juvenile bud stage 10.643
SRR8316897Juvenile bud stage 3.839
SRR8316894Third green stage 5.495
SRR8316900Third green stage 12.341
SRR8316901Third green stage 13.031
SRR8316898Complete white stage 3.939
SRR8316899Complete white stage 13.365
SRR8316903Complete white stage 9.374
SRR8316902Silver flowering stage6.053
SRR8316904Silver flowering stage8.175
SRR8316905Silver flowering stage3.548
SRR8316906Gold flowering stage 12.740
SRR8316907Gold flowering stage 10.361
SRR8316908Gold flowering stage 14.238
SRP132670SRR6706286Control18.119
SRR6706287Light intensity 50%16.812
SRR6706288Light intensity 20%15.204
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.932
CNS0095593Slightly white alabastrum(diploid) 213.300
CNS0095594Slightly white alabastrum(diploid) 318.027
CNS0095595Whole white alabastrum(diploid) 214.130
CNS0095596Whole white alabastrum(diploid) 313.623
CNS0095597Whole white alabastrum(diploid) 414.395
CNS0095598Silvery flower (diploied) 114.568
CNS0095599Silvery flower (diploied) 210.769
CNS0095600Silvery flower (diploied) 313.731
CNS0095601Golden flower (diploid) 112.835
CNS0095602Golden flower (diploid) 215.789
CNS0095603Golden flower (diploid) 315.879
CNS0095604Slightly white alabastrum(tetraploid) 113.847
CNS0095605Slightly white alabastrum(tetraploid) 212.818
CNS0095606Slightly white alabastrum(tetraploid) 317.762
CNS0095607Whole white alabastrum(tetraploid) 112.625
CNS0095608Whole white alabastrum(tetraploid) 210.056
CNS0095609Whole white alabastrum(tetraploid) 313.864
CNS0095610Silvery flower (tetraploid) 115.385
CNS0095611Silvery flower (tetraploid) 216.063
CNS0095612Silvery flower (tetraploid) 314.311
CNS0095613Golden flower (tetraploid) 110.853
CNS0095614Golden flower (tetraploid) 213.410
CNS0095615Golden flower (tetraploid) 314.518
CRA001975CRR073297Stem 116.911
CRR073298Stem 217.785
CRR073299Stem 314.700
CRR073300Leaf 120.745
CRR073301Leaf 217.039
CRR073302Leaf 310.968
CRR073303Juvenile bud 114.994
CRR073304Juvenile bud 210.836
CRR073305Juvenile bud 315.708
CRR073306Third green 15.679
CRR073307Third green 24.788
CRR073308Third green 36.472
CRR073309Second white 15.822
CRR073310Second white 29.171
CRR073311Second white 38.038
CRR073312Silver flowering 17.065
CRR073313Silver flowering 27.047
CRR073314Silver flowering 36.828
CRR073315Gold flowering 15.838
CRR073316Gold flowering 28.363
CRR073317Gold flowering 33.356
CRR073318Tawny withering 114.348
CRR073319Tawny withering 212.732
CRR073320Tawny withering 39.084