Gene detail

Detail information of GWHGAAZE015263

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009800558.1	2.6522E-150	PREDICTED: casein kinase I isoform delta-like, partial [Nicotiana sylvestris]
Swissprot	tr\|P42158\|KC1D_ARATH	4E-145	Casein kinase I isoform delta-like
trEMBL	tr\|W9QK02\|W9QK02_9ROSA	8E-150	Casein kinase I isoform delta-like protein {ECO:0000313\|EMBL:EXB38871.1}
TAIR10	AT4G26100.1	3E-118	casein kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	29174956	29181395	-
GWHAAZE00000004	mRNA	29174956	29181395	-
GWHAAZE00000004	exon	29174956	29175029	-
GWHAAZE00000004	exon	29176285	29176346	-
GWHAAZE00000004	exon	29176435	29176516	-
GWHAAZE00000004	exon	29177026	29177152	-
GWHAAZE00000004	exon	29177244	29177328	-
GWHAAZE00000004	exon	29178421	29178484	-
GWHAAZE00000004	exon	29178885	29178946	-
GWHAAZE00000004	exon	29179999	29180094	-
GWHAAZE00000004	exon	29180596	29180767	-
GWHAAZE00000004	exon	29180870	29180939	-
GWHAAZE00000004	exon	29181291	29181395	-
GWHAAZE00000004	CDS	29181291	29181395	-
GWHAAZE00000004	CDS	29180870	29180939	-
GWHAAZE00000004	CDS	29180596	29180767	-
GWHAAZE00000004	CDS	29179999	29180094	-
GWHAAZE00000004	CDS	29178885	29178946	-
GWHAAZE00000004	CDS	29178421	29178484	-
GWHAAZE00000004	CDS	29177244	29177328	-
GWHAAZE00000004	CDS	29177026	29177152	-
GWHAAZE00000004	CDS	29176435	29176516	-
GWHAAZE00000004	CDS	29176285	29176346	-
GWHAAZE00000004	CDS	29174956	29175029	-

Transcript Sequence
>GWHTAAZE015279 ATGATTGGTGATCGAAGTAGCCCTCGATTACAAAATCACAAATTTCACTATTTAGTTGGCTACGGGTTTCAATTATCAAAGCTTGTTGATGGAGATGATGGCATGGAAAATATCAAGACAAAGCATCAGCAATTGTTCTCTGAGGCAAAGTTGTACAAAATTTTGCAGGGAGGAACTGGAATTCCAAGTGTGAGATGGCACGGTGTTGAGGGAGACTATAATGTGCTAGTGATGGATTTGCTGGGACCCAGCCTTGAAGATTTATTCAATTTTTGCAGTAGGAAACTTTCGTTGAAGACAGTTCTCATGCTTGCAGATCAAATGGTAGTTTCTCTGACTTTAACGTTGTTTTTTCCTTTTGCTATAATGCAGGTTTACATAATTGATTTTGGTCTAGCTAAGAAATACAAAGACCCATGTACCAACCAACACGTTCCTTATAGAGAGAATAAAAACTTGGCTGGAACTGCGAGATATGCAAGCATAAATGCACACCTTGGTGTTGAACAAACCAGGAGGGATGATTTGGAATCTCTTGGATATGTCCTTATGTATTTCCTAAGAGGAAGCCTTCCTTGGCAAGGGCTTAAAGGAGGAACGAAGAAACAAAAGTACGAAAAAATTTGTGAAAGAAAGGTTTCTACACCAATTAAGGCCTTGTGCCGGGGTTACCCTGCAGAGTTTGAATCGTACTTCCATTACTGCCGTTCACTACGTTTTGATGATAAACCAGATTATATTTATCTAAAGAGACTATTCCGCAACCTATTTGTTCGTGAAGGCTTCCAATTTGATTATGTTTTTGATTGGACCATCTTGAAGTATCAGCAGTCGGAGACTGCTACTCCCCTTCCCAGGTTCTTGCCGAATGGTGGAGCAAAATTTGGAATCCGCCATCCTATTCCAAATGCTGGTCTGAAGTCAGGTGATGGAGAACAGAAAGTAGCTCAGAAGAGTCGAGGTGCAAATGATTCAACAGGCTGCAAAGAAGCTACGGCA

Network for GWHGAAZE015263

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02218	CSNK1, CKI	MAPK signaling pathway - yeast	map04011
K02218	CSNK1, CKI	Hippo signaling pathway - multiple species	map04392

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.936
	SRR3591706	second leaf	7.074
	SRR3591707	mature leaf	10.566
	SRR3591708	Shoot apex	10.579
	SRR3591709	Stem	12.115
	SRR3591710	White floral bud	8.990
	SRR3591711	White flower	13.335
	SRR3591712	Green floral bud	9.879
	SRR3591713	Yellow flower	7.862
SRP173429	SRR8316895	Juvenile bud stage	11.185
	SRR8316896	Juvenile bud stage	13.138
	SRR8316897	Juvenile bud stage	6.748
	SRR8316894	Third green stage	5.347
	SRR8316900	Third green stage	11.075
	SRR8316901	Third green stage	11.588
	SRR8316898	Complete white stage	2.678
	SRR8316899	Complete white stage	18.762
	SRR8316903	Complete white stage	6.146
	SRR8316902	Silver flowering stage	2.619
	SRR8316904	Silver flowering stage	3.392
	SRR8316905	Silver flowering stage	1.512
	SRR8316906	Gold flowering stage	5.824
	SRR8316907	Gold flowering stage	5.559
	SRR8316908	Gold flowering stage	6.228
SRP132670	SRR6706286	Control	12.184
	SRR6706287	Light intensity 50%	11.326
	SRR6706288	Light intensity 20%	10.468
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.203
	CNS0095593	Slightly white alabastrum(diploid) 2	9.784
	CNS0095594	Slightly white alabastrum(diploid) 3	8.032
	CNS0095595	Whole white alabastrum(diploid) 2	7.481
	CNS0095596	Whole white alabastrum(diploid) 3	6.416
	CNS0095597	Whole white alabastrum(diploid) 4	7.363
	CNS0095598	Silvery flower (diploied) 1	18.689
	CNS0095599	Silvery flower (diploied) 2	12.105
	CNS0095600	Silvery flower (diploied) 3	12.929
	CNS0095601	Golden flower (diploid) 1	18.877
	CNS0095602	Golden flower (diploid) 2	16.616
	CNS0095603	Golden flower (diploid) 3	15.095
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.205
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.298
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.824
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.752
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.731
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.631
	CNS0095610	Silvery flower (tetraploid) 1	18.276
	CNS0095611	Silvery flower (tetraploid) 2	20.291
	CNS0095612	Silvery flower (tetraploid) 3	11.172
	CNS0095613	Golden flower (tetraploid) 1	8.522
	CNS0095614	Golden flower (tetraploid) 2	12.706
	CNS0095615	Golden flower (tetraploid) 3	6.187
CRA001975	CRR073297	Stem 1	6.387
	CRR073298	Stem 2	6.445
	CRR073299	Stem 3	8.082
	CRR073300	Leaf 1	3.878
	CRR073301	Leaf 2	5.687
	CRR073302	Leaf 3	5.423
	CRR073303	Juvenile bud 1	4.921
	CRR073304	Juvenile bud 2	3.250
	CRR073305	Juvenile bud 3	4.853
	CRR073306	Third green 1	0.137
	CRR073307	Third green 2	0.251
	CRR073308	Third green 3	0.244
	CRR073309	Second white 1	1.207
	CRR073310	Second white 2	1.705
	CRR073311	Second white 3	1.331
	CRR073312	Silver flowering 1	0.100
	CRR073313	Silver flowering 2	0.641
	CRR073314	Silver flowering 3	0.524
	CRR073315	Gold flowering 1	13.717
	CRR073316	Gold flowering 2	18.876
	CRR073317	Gold flowering 3	10.701
	CRR073318	Tawny withering 1	6.786
	CRR073319	Tawny withering 2	6.085
	CRR073320	Tawny withering 3	8.334