Gene detail

Detail information of GWHGAAZE015260

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_003533770.1	PREDICTED: eukaryotic initiation factor 4A-15-like isoformX1 [Glycine max]
Swissprot	tr\|Q40468\|IF415_TOBAC	Eukaryotic initiation factor 4A-15
trEMBL	tr\|I1L1K7\|I1L1K7_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G07530.4}
TAIR10	AT3G13920.1	eukaryotic translation initiation factor 4A1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	29140450	29143812	+
GWHAAZE00000004	mRNA	29140450	29143812	+
GWHAAZE00000004	exon	29140450	29140573	+
GWHAAZE00000004	exon	29140996	29141102	+
GWHAAZE00000004	exon	29141651	29142081	+
GWHAAZE00000004	exon	29143179	29143286	+
GWHAAZE00000004	exon	29143360	29143812	+
GWHAAZE00000004	five_prime_UTR	29140450	29140505	+
GWHAAZE00000004	CDS	29140506	29140573	+
GWHAAZE00000004	CDS	29140996	29141102	+
GWHAAZE00000004	CDS	29141651	29142081	+
GWHAAZE00000004	CDS	29143179	29143286	+
GWHAAZE00000004	CDS	29143360	29143812	+

Transcript Sequence
>GWHTAAZE015276 TTCGTTGTAAACTTATTTTGTTTTTCTTACGAACTATTGTTGCTGTCTATGCAGTCATGGCGGGTATGGCACCAGAAGGATCGCAGTTTGATGCTAGACAATTTGATACCAAAATGAATGAGTTACTCTCAGTTGAAGGGCAAGATTTCTTTACATCGTATGATGAGGTTTATGATAGTTTTGATTCAATGGGTTTGCAAGAGAACCTTCTAAGGGGCATTTATGCATACGGTTTTGAAAAACCTTCAGCTATTCAACAAAGGGGTATTGTTCCTTTCTGCAAGGGTCTCGATGTAATTCAACAGGCTCAATCTGGAACCGGGAAAACGGCAACTTTCTGCTCAGGTATCCTTCAGCAACTTGACTATGCTATAGTAGAATGCCAGGCCTTGGTTTTGGCCCCTACTCGTGAGCTTGCACAACAGATTGAGAAGGTTATGAGAGCACTAGGTGACTACCTTGGTGTGAAGGTCCATGCTTGTGTTGGTGGAACTAGTGTTCGTGAGGACCAGCGCATTTTGTCGAGCGGGGTTCATGTGGTTGTTGGTACTCCGGGGCGTGTGTTTGATATGCTTCGAAGACAGTCTCTTCGTCCCGATTACATTAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCTCGGGGTTTCAAGGATCAGATCTACGATATTTTCCAGCTCCTCCCCTCAAAGGTTCAAGTCGGAGTCTTCTCCGCTACAATGCCACCCGAGGCCCTTGAGATCACAAGGAAGTTCATGAACAAGCCTGAAGAATGGAAACTCGAGACCCTCTGCGATCTCTATGAAACCCTAGCAATCACCCAAAGTGTAATCTTTGTGAACACGCCGAAAGTCGATTGGCTAACCGACAAGATGCGGTCCCGGGACCACACGGTATCGGCTACCCACGGTGACATGGATCAAAACACTAGGGACATTATCATGCGAGAGTTCCGGTCTGGCTCATCTCGGGTCCTTATCACCACCGATCTTTTAGCCCGTGGTATCGATGTTCAACAAGTCTCTCTTGTTATCAACTACGATCTACCAACTCAACCTGAGAACTATCTTCACCGTATCGGGCGTAGTGGTCGGTTTGGGAGAAAGGGTGTTGCAATCAATTTTGTGACCAAGGAAGATGAGAGAATGCTGTTTGATATACAGAAGTTTTATAACGTGGTTGTTGAGGAGCTACCTTCGAATGTTGCTGATCTTCTTTGA

Network for GWHGAAZE015260

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.30	DEAD	65	226	1.80E-39
PF00271.32	Helicase_C	242	349	1.10E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03257	EIF4A	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	117.027
	SRR3591706	second leaf	73.435
	SRR3591707	mature leaf	80.020
	SRR3591708	Shoot apex	88.612
	SRR3591709	Stem	138.719
	SRR3591710	White floral bud	117.365
	SRR3591711	White flower	120.799
	SRR3591712	Green floral bud	163.419
	SRR3591713	Yellow flower	75.238
SRP173429	SRR8316895	Juvenile bud stage	118.509
	SRR8316896	Juvenile bud stage	164.478
	SRR8316897	Juvenile bud stage	92.936
	SRR8316894	Third green stage	50.977
	SRR8316900	Third green stage	162.100
	SRR8316901	Third green stage	156.419
	SRR8316898	Complete white stage	44.506
	SRR8316899	Complete white stage	194.511
	SRR8316903	Complete white stage	83.256
	SRR8316902	Silver flowering stage	41.983
	SRR8316904	Silver flowering stage	49.439
	SRR8316905	Silver flowering stage	20.755
	SRR8316906	Gold flowering stage	77.087
	SRR8316907	Gold flowering stage	68.833
	SRR8316908	Gold flowering stage	75.939
SRP132670	SRR6706286	Control	129.419
	SRR6706287	Light intensity 50%	131.098
	SRR6706288	Light intensity 20%	146.550
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	123.575
	CNS0095593	Slightly white alabastrum(diploid) 2	124.760
	CNS0095594	Slightly white alabastrum(diploid) 3	121.986
	CNS0095595	Whole white alabastrum(diploid) 2	127.248
	CNS0095596	Whole white alabastrum(diploid) 3	111.964
	CNS0095597	Whole white alabastrum(diploid) 4	110.093
	CNS0095598	Silvery flower (diploied) 1	112.149
	CNS0095599	Silvery flower (diploied) 2	110.905
	CNS0095600	Silvery flower (diploied) 3	133.705
	CNS0095601	Golden flower (diploid) 1	111.804
	CNS0095602	Golden flower (diploid) 2	137.219
	CNS0095603	Golden flower (diploid) 3	134.329
	CNS0095604	Slightly white alabastrum(tetraploid) 1	117.237
	CNS0095605	Slightly white alabastrum(tetraploid) 2	100.694
	CNS0095606	Slightly white alabastrum(tetraploid) 3	150.131
	CNS0095607	Whole white alabastrum(tetraploid) 1	122.293
	CNS0095608	Whole white alabastrum(tetraploid) 2	104.484
	CNS0095609	Whole white alabastrum(tetraploid) 3	141.286
	CNS0095610	Silvery flower (tetraploid) 1	89.987
	CNS0095611	Silvery flower (tetraploid) 2	93.831
	CNS0095612	Silvery flower (tetraploid) 3	80.643
	CNS0095613	Golden flower (tetraploid) 1	52.372
	CNS0095614	Golden flower (tetraploid) 2	81.490
	CNS0095615	Golden flower (tetraploid) 3	43.526
CRA001975	CRR073297	Stem 1	139.754
	CRR073298	Stem 2	130.743
	CRR073299	Stem 3	155.830
	CRR073300	Leaf 1	157.956
	CRR073301	Leaf 2	168.950
	CRR073302	Leaf 3	148.751
	CRR073303	Juvenile bud 1	168.744
	CRR073304	Juvenile bud 2	120.986
	CRR073305	Juvenile bud 3	193.893
	CRR073306	Third green 1	83.162
	CRR073307	Third green 2	92.753
	CRR073308	Third green 3	78.706
	CRR073309	Second white 1	114.164
	CRR073310	Second white 2	89.938
	CRR073311	Second white 3	94.956
	CRR073312	Silver flowering 1	102.574
	CRR073313	Silver flowering 2	127.956
	CRR073314	Silver flowering 3	83.599
	CRR073315	Gold flowering 1	68.655
	CRR073316	Gold flowering 2	91.368
	CRR073317	Gold flowering 3	96.458
	CRR073318	Tawny withering 1	182.101
	CRR073319	Tawny withering 2	152.190
	CRR073320	Tawny withering 3	183.097