Gene detail

Detail information of GWHGAAZE015256

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007012759.1	0	U-box domain-containing protein kinase family protein, putative isoform 1 [Theobroma cacao]
Swissprot	tr\|Q8S8S7\|PUB34_ARATH	1E-175	Serine/threonine-protein kinase
trEMBL	tr\|A0A061GLU3\|A0A061GLU3_THECC	0	U-box domain-containing protein kinase family protein, putative isoform 1 {ECO:0000313\|EMBL:EOY30378.1}
TAIR10	AT5G57035.1	9E-141	U-box domain-containing protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	29016531	29022088	-
GWHAAZE00000004	mRNA	29016531	29022088	-
GWHAAZE00000004	exon	29016531	29016722	-
GWHAAZE00000004	exon	29017156	29017257	-
GWHAAZE00000004	exon	29017321	29017481	-
GWHAAZE00000004	exon	29017976	29018681	-
GWHAAZE00000004	exon	29021262	29021659	-
GWHAAZE00000004	exon	29022079	29022088	-
GWHAAZE00000004	CDS	29022079	29022088	-
GWHAAZE00000004	CDS	29021262	29021659	-
GWHAAZE00000004	CDS	29017976	29018681	-
GWHAAZE00000004	CDS	29017321	29017481	-
GWHAAZE00000004	CDS	29017156	29017257	-
GWHAAZE00000004	CDS	29016531	29016722	-

Transcript Sequence
>GWHTAAZE015272 ATGCACCGAAAATCAAAAAGAGTGCATGAAGCCCTCAAAAGAGAGGAAGAATTCAGGAAAATCGCTGCCAAAGAGAAAGAGAAGCATTTGGAAGCCGTAAAAGAGGTTGAGGCAGCGAGAAATTCGCTTGCTAAAGAGTCTTATGAGAGGAAAATAGCAGAACTGAATGCTCTAAAAGAATCCTTGGAGAAACAAAAGATCGTTGATGCACTCTTTTTGAGTGATAAAAGGTATAGAAGATATAGTAGGGACGAGATTGAGAGAGCAACCGATCATTTCTCTGAGAGTAAGATGATTGGTGAAGGTGCATACGGGAAAGTTTACAAATGCAATCTTGATCACACCCCGGTAGCAGTCAAAGTTCTTCGACCTGAGTCATCTGAGAAGAAAGAGGAATTCTTGAGAGAGGTTGAAGTTCTAAGCCAACTACGCCATCCAAACATGGTTCTACTACTAGGAGCCTGTCCAGAGAGTGGTTGCCTAGTTTATGAATACATGGAAAATGGTAGCCTCGACGACCATATATACCACCGGACCACTAAACCTCTCCCTTGGTACACTCGATTCCGTATACTTTTCCATGTAGCTTGCGGGCTTGTGTTCTTACACAACTCAAAACCAGAGCCCATTATTCATCGCGATCTAAAACCCGGAAACATTTTATTAGACAGAAACTACGTGAGCAAAATCGGAGACGTTGGCCTTGCAAAACTCGTAACAGATGTTGTACCGGACAATGTAACAGAGTACAGGGACTCCATTCTTGCTGGTACCCTTTTGTATATGGATCCAGAGTATCAAAGAACAGGTACTATCCGACCCAAATCGGATTTATACGCATTTGGGATAATAACACTCCAATTGTTGGCGGGTCGGCATCCAAATGGGCTTTTAGTGAAGTTCGAAAATGGTATCAGGTCGGGTTCTTTTTCGGATATACTTGACAAGTCAGTTACGGATTGGCCGGTGGCTGAAGCAGAGGAACTGGCTCTGTTGGGGCTTGATTGCTGTAGACTTCGGTGCAGAGATAGGCCAGATCTTGAAACCGAAGTGCTTCCGGTTCTGAAAAAACTTGCGGATTTTGCCGATGATTCATTGAAGGGTGAGAGAAAGGGCTTGGATAAGAGTGTCAATGAAGAATTTACTATACTGACCCTTCTAACTGAATGTTTTGATGGTTTACCAATGGATTGGTCTGTGTTTGGGATCCGCTGGGGGTCTGCTGAAAACACTGACCAATATAGTGCTAACACGTCAACTTGGTCAGCAAATAGGTTAAGATGTGTTAGCAATGCAATTGTCCGCATCCGGGTTCCACTAGGATCTTCTAAAAATGCAGGTCAATGCAGTGCTGACACATCAGCACGGCAAAAAGTGGAAGTAATGGACGATCCGCACATAGCGGCGGATGGTTTCACTTACGAGCATAAAGCGATAAAATTATGGTTGGATAGACACAGCTTGTCGCCGGTTACAAAGCTGAGTATGCACCATAAGGAACTGACGCCTAACCACACGCTACGTTCTGCCATACAAGAGTGGAAATCGAGTGTAATATCGACACCGTGA

Network for GWHGAAZE015256

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	96	348	7.60E-41
PF04564.16	U-box	459	516	2.20E-11

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-IXb

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016567	biological_process	protein ubiquitination
GO:0006468	biological_process	protein phosphorylation
GO:0004842	molecular_function	ubiquitin-protein transferase activity
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.104
	SRR3591706	second leaf	4.504
	SRR3591707	mature leaf	7.696
	SRR3591708	Shoot apex	4.714
	SRR3591709	Stem	8.679
	SRR3591710	White floral bud	10.750
	SRR3591711	White flower	18.177
	SRR3591712	Green floral bud	9.561
	SRR3591713	Yellow flower	21.809
SRP173429	SRR8316895	Juvenile bud stage	6.430
	SRR8316896	Juvenile bud stage	10.448
	SRR8316897	Juvenile bud stage	2.441
	SRR8316894	Third green stage	3.243
	SRR8316900	Third green stage	6.781
	SRR8316901	Third green stage	8.400
	SRR8316898	Complete white stage	4.303
	SRR8316899	Complete white stage	10.409
	SRR8316903	Complete white stage	8.569
	SRR8316902	Silver flowering stage	7.506
	SRR8316904	Silver flowering stage	9.441
	SRR8316905	Silver flowering stage	4.114
	SRR8316906	Gold flowering stage	16.813
	SRR8316907	Gold flowering stage	13.469
	SRR8316908	Gold flowering stage	16.522
SRP132670	SRR6706286	Control	6.337
	SRR6706287	Light intensity 50%	5.762
	SRR6706288	Light intensity 20%	6.958
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.880
	CNS0095593	Slightly white alabastrum(diploid) 2	5.630
	CNS0095594	Slightly white alabastrum(diploid) 3	7.067
	CNS0095595	Whole white alabastrum(diploid) 2	5.617
	CNS0095596	Whole white alabastrum(diploid) 3	5.580
	CNS0095597	Whole white alabastrum(diploid) 4	4.823
	CNS0095598	Silvery flower (diploied) 1	11.033
	CNS0095599	Silvery flower (diploied) 2	8.226
	CNS0095600	Silvery flower (diploied) 3	17.432
	CNS0095601	Golden flower (diploid) 1	13.404
	CNS0095602	Golden flower (diploid) 2	20.117
	CNS0095603	Golden flower (diploid) 3	20.644
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.748
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.323
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.911
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.588
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.345
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.175
	CNS0095610	Silvery flower (tetraploid) 1	15.817
	CNS0095611	Silvery flower (tetraploid) 2	19.209
	CNS0095612	Silvery flower (tetraploid) 3	17.417
	CNS0095613	Golden flower (tetraploid) 1	17.167
	CNS0095614	Golden flower (tetraploid) 2	18.221
	CNS0095615	Golden flower (tetraploid) 3	26.113
CRA001975	CRR073297	Stem 1	9.990
	CRR073298	Stem 2	7.720
	CRR073299	Stem 3	8.104
	CRR073300	Leaf 1	6.856
	CRR073301	Leaf 2	6.937
	CRR073302	Leaf 3	5.042
	CRR073303	Juvenile bud 1	5.607
	CRR073304	Juvenile bud 2	5.789
	CRR073305	Juvenile bud 3	6.324
	CRR073306	Third green 1	7.280
	CRR073307	Third green 2	6.535
	CRR073308	Third green 3	5.269
	CRR073309	Second white 1	8.957
	CRR073310	Second white 2	11.387
	CRR073311	Second white 3	11.328
	CRR073312	Silver flowering 1	14.314
	CRR073313	Silver flowering 2	12.915
	CRR073314	Silver flowering 3	12.691
	CRR073315	Gold flowering 1	8.485
	CRR073316	Gold flowering 2	11.679
	CRR073317	Gold flowering 3	7.682
	CRR073318	Tawny withering 1	9.942
	CRR073319	Tawny withering 2	10.288
	CRR073320	Tawny withering 3	8.276