Gene detail

Detail information of GWHGAAZE015253

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008805805.1	0	PREDICTED: serine/threonine-protein kinase 38-like [Phoenix dactylifera]
Swissprot	tr\|Q9LE81\|IRE_ARATH	5E-79	Probable serine/threonine protein kinase IRE {ECO:0000305}
trEMBL	tr\|A0A059CV45\|A0A059CV45_EUCGR	0	Uncharacterized protein {ECO:0000313\|EMBL:KCW82036.1}
TAIR10	AT4G33080.1	6E-176	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	28973129	28988297	-
GWHAAZE00000004	mRNA	28973129	28988297	-
GWHAAZE00000004	exon	28973129	28973316	-
GWHAAZE00000004	exon	28974220	28974360	-
GWHAAZE00000004	exon	28974645	28974729	-
GWHAAZE00000004	exon	28974919	28974963	-
GWHAAZE00000004	exon	28978100	28978213	-
GWHAAZE00000004	exon	28978326	28978457	-
GWHAAZE00000004	exon	28979844	28979928	-
GWHAAZE00000004	exon	28980344	28980423	-
GWHAAZE00000004	exon	28982858	28983071	-
GWHAAZE00000004	exon	28984629	28984870	-
GWHAAZE00000004	exon	28986224	28986307	-
GWHAAZE00000004	exon	28988178	28988297	-
GWHAAZE00000004	CDS	28988178	28988297	-
GWHAAZE00000004	CDS	28986224	28986307	-
GWHAAZE00000004	CDS	28984629	28984870	-
GWHAAZE00000004	CDS	28982858	28983071	-
GWHAAZE00000004	CDS	28980344	28980423	-
GWHAAZE00000004	CDS	28979844	28979928	-
GWHAAZE00000004	CDS	28978326	28978457	-
GWHAAZE00000004	CDS	28978100	28978213	-
GWHAAZE00000004	CDS	28974919	28974963	-
GWHAAZE00000004	CDS	28974645	28974729	-
GWHAAZE00000004	CDS	28974329	28974360	-
GWHAAZE00000004	three_prime_UTR	28974220	28974328	-
GWHAAZE00000004	three_prime_UTR	28973129	28973316	-

Transcript Sequence
>GWHTAAZE015269 ATGAATCTTTTGAAAGACTTGGAGCGCATAGAGACGGAATATATGCGGCTTAAGCGCCACAAATTTTGTGTTGATGATTTTGAACTTCTAACAATTATTGGCAGAGGAGCCTTTGGAGAGGTTAGACTATGTCGGGAGAAGGAATCTGGCAATATATATGCCATGAAAAAGTTAAAGAAGTCCGAAATGCTTATCAGGGGACAGGTTGAACATGTTAGGGCTGAAAGGAATTTGCTTGCAGAAGTTGGTAACCCGTTCATCGTAAAACTCTATTATTCTTTTCAAGACGACGAATACTTGTACCTAGTGATGGAATACCTACCTGGTGGTGACATTATGACATTGCTGATGAGAGAAGAGACTTTAACCGAAACTGTCGCTAGATTCTACATTGCACAATGTGTTCTGGCCATTGAATCTATTCATAAACATAACTATATCCACAGAGATATCAAGCCCGACAACCTTCTACTGGATAAAAATGGTCATATGAAGCTGTCAGATTTTGGTCTTTGCAAGCCTCTTGACTGTTCAAATTTACATACCATGACTGGAAATGAAGTGAATGTCAATGGATACTTCCCTGATAATGGAATAGGTAGCCACTGGGATAGTTCTCATGAACAAAAGCAGAGTTGGCAAATAAATAGGAGGATGCTGGCATTTTCAACAGTGGGTACACCTGATTACATTGCTCCAGAGGTGTTATTGAAGAAAGGCTACAGCATGGAGTGTGACTGGTGGTCTCTTGGTGCTATAATGTACGAGATGCTTATTGGCTATCCCCCGTTCTACTCCAATGATCCTATAACAACATGCAGAAAGATTGTGCACTGGAAACAACAATTAAAATTCCCAGCAGAAGCAAGGTTGAGCCCAGAAGCGAAGGACCTAATACGTGGGCTGCTTTGTGATGTTGAACATCGGCTAGGTACACTAGGGGCAGACCAAATAAAAGCCCATCCTTGGTTCAAAGATATTTCGTGGAAGACGCTCTACGAAATGGAGGCAGCTTTTAAACCTGAGGTGAATGGGGAGCTTGATACTCAAAATTTCATAAAATTTGATGAGGTGGAGCCGCCACCAGCAAGAACGGGTTCTGGACGCTTAAGAAAGATGCTGTTAACTCCTAATGATTTAAATTTTGTTGGCTATACATACAAGAATTTTGAGGCGGTCAAAGGGTTACATCGTCCTCCAGGTGATTCTGGAGTTCAATGCTCTGCCAAATAGATGAGCAGAAATGCGGAAATGCTAACTTGATCTGTCCATTATTAGCTGATACAGTTTTGGGCCTGGTACACACAAGCCCCATAACGAAGAATGTGAGCACGCTTTCTCAGACCTTGCAAGTGTACACTAATATTGGAGTAATTCCCCAAAACGCCCCGAGAAATGGGTTGGCTCAAGCTATAACGGCGGTTTGATTTTAATTGTTCGTGTACAAATCGAGTAACTGGAAAATGTGCAAAAGGCTGTAACCATTATCATCAAATATTGATATAATGCAATGATATATTCCTTCTTCCA

Network for GWHGAAZE015253

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	28	324	3.60E-67

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	AGC_NDR

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.264
	SRR3591706	second leaf	0.474
	SRR3591707	mature leaf	0.067
	SRR3591708	Shoot apex	2.122
	SRR3591709	Stem	2.197
	SRR3591710	White floral bud	81.481
	SRR3591711	White flower	4.347
	SRR3591712	Green floral bud	41.549
	SRR3591713	Yellow flower	3.480
SRP173429	SRR8316895	Juvenile bud stage	6.649
	SRR8316896	Juvenile bud stage	17.466
	SRR8316897	Juvenile bud stage	5.370
	SRR8316894	Third green stage	8.147
	SRR8316900	Third green stage	44.030
	SRR8316901	Third green stage	42.647
	SRR8316898	Complete white stage	2.646
	SRR8316899	Complete white stage	6.075
	SRR8316903	Complete white stage	5.307
	SRR8316902	Silver flowering stage	3.124
	SRR8316904	Silver flowering stage	6.190
	SRR8316905	Silver flowering stage	2.318
	SRR8316906	Gold flowering stage	4.135
	SRR8316907	Gold flowering stage	3.706
	SRR8316908	Gold flowering stage	2.809
SRP132670	SRR6706286	Control	20.628
	SRR6706287	Light intensity 50%	22.638
	SRR6706288	Light intensity 20%	21.436
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	47.064
	CNS0095593	Slightly white alabastrum(diploid) 2	40.712
	CNS0095594	Slightly white alabastrum(diploid) 3	53.646
	CNS0095595	Whole white alabastrum(diploid) 2	126.698
	CNS0095596	Whole white alabastrum(diploid) 3	145.271
	CNS0095597	Whole white alabastrum(diploid) 4	182.146
	CNS0095598	Silvery flower (diploied) 1	10.384
	CNS0095599	Silvery flower (diploied) 2	26.797
	CNS0095600	Silvery flower (diploied) 3	6.302
	CNS0095601	Golden flower (diploid) 1	10.386
	CNS0095602	Golden flower (diploid) 2	4.936
	CNS0095603	Golden flower (diploid) 3	5.512
	CNS0095604	Slightly white alabastrum(tetraploid) 1	84.527
	CNS0095605	Slightly white alabastrum(tetraploid) 2	84.275
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.442
	CNS0095607	Whole white alabastrum(tetraploid) 1	184.254
	CNS0095608	Whole white alabastrum(tetraploid) 2	218.091
	CNS0095609	Whole white alabastrum(tetraploid) 3	81.772
	CNS0095610	Silvery flower (tetraploid) 1	7.003
	CNS0095611	Silvery flower (tetraploid) 2	12.516
	CNS0095612	Silvery flower (tetraploid) 3	34.588
	CNS0095613	Golden flower (tetraploid) 1	7.459
	CNS0095614	Golden flower (tetraploid) 2	4.705
	CNS0095615	Golden flower (tetraploid) 3	13.958
CRA001975	CRR073297	Stem 1	10.680
	CRR073298	Stem 2	9.865
	CRR073299	Stem 3	4.476
	CRR073300	Leaf 1	32.876
	CRR073301	Leaf 2	19.329
	CRR073302	Leaf 3	10.756
	CRR073303	Juvenile bud 1	24.395
	CRR073304	Juvenile bud 2	14.993
	CRR073305	Juvenile bud 3	4.240
	CRR073306	Third green 1	9.996
	CRR073307	Third green 2	7.920
	CRR073308	Third green 3	10.532
	CRR073309	Second white 1	1.516
	CRR073310	Second white 2	4.254
	CRR073311	Second white 3	2.940
	CRR073312	Silver flowering 1	12.652
	CRR073313	Silver flowering 2	11.557
	CRR073314	Silver flowering 3	6.438
	CRR073315	Gold flowering 1	5.296
	CRR073316	Gold flowering 2	3.994
	CRR073317	Gold flowering 3	0.834
	CRR073318	Tawny withering 1	18.851
	CRR073319	Tawny withering 2	16.183
	CRR073320	Tawny withering 3	13.153