Gene detail

Detail information of GWHGAAZE015249

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP33876.1	0	hypothetical protein JCGZ_07447 [Jatropha curcas]
Swissprot	tr\|Q3Y8L7\|DAW1_CHLRE	7E-29	Dynein assembly factor with WDR repeat domains 1
trEMBL	tr\|A0A067KCD2\|A0A067KCD2_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP33876.1}
TAIR10	AT4G29830.1	3E-142	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	28836814	28844150	-
GWHAAZE00000004	mRNA	28836814	28844150	-
GWHAAZE00000004	exon	28844090	28844150	-
GWHAAZE00000004	exon	28841054	28841385	-
GWHAAZE00000004	exon	28836814	28837440	-
GWHAAZE00000004	CDS	28844090	28844150	-
GWHAAZE00000004	CDS	28841054	28841385	-
GWHAAZE00000004	CDS	28836814	28837440	-

Transcript Sequence
>GWHTAAZE015265 ATGTATAACAGACTCGGCTTTAATGGGTCGAGTGGAGCTATTAATGCTCATTTCATGAAAGCATGGCTAAGAACCCTAGAGAGTGCACACTCCGATTCAATCTGGGCCGCCACGTGGGCACCGGCGACCGACCATTCACCGGCGCTCCTCCTCACTGGCTCCCTCGACGAGACCGTCCGCCTCTGGAACGCGGACGGGGACCTCACCCTCGTCCGTACCAACTCCGGCCACTGCCTCGGCGTCGTCTCCGTCGCCGCTCATCCATCCGGCAGGATCGCCGCCTCTGCTTCGATCGATAGCTTTGTTAGGGTTTTCGATGTGGAGTCTAATAATACAATCGCTACTCTCGAGGCTCCGCCTTCAGAAGTTTGGCAAATGCAATTCAATCCCAAGGGTACCACACTAGCAGTTGCAGGTGGCAGCAGTGCATCAGTCAAGCTATGGGACACTGCCGAGTGGCAACTCATAGCCACCCTCTCAATCCCCCGCCCTGAAGGACCCAAGCCCTCTGACAAATCCGCCAACAAGAAATTTGTCCTCTCGGTCGCATTTAGCCCTGATGGTCGACACCTTGCCTGTGGTTCAATGGACGGCACCATCTCGGTCTTCGACGTTGCCCGGGCCAAGTTCCTCCACCACCTCGAAGGCCACTCAATGCCGGTCCGGTCCCTCGTCTACTCAACGTTTGATTCTCGGGTCCTCGTTTCCGGCTCCGATGATGGTCACGTCCACATGTATGATGCAGAGGGTAAGACCTTGTTTGGGTCCATGTCAGGTCACGCCAGCTGGGTGTTGAGCGTGGACGTGAGCCCTGATGGTGCAGCCATTGCTACTGGCTCGAGCGACAAGACGGTCAAGCTGTGGGACCCGAAAATGAGGGCGGCTGTCCAGACCATGACCAATCATTTGGACCAGGTTTGGGCAGTGGCATTTCAACCACCAGGAGGAAGTGGGACCCGGGCTTGTCAGCTCGCGAGTGTGTCGGATGACAAGGGCATATCACTCTACGAATACTCATGA

Network for GWHGAAZE015249

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	24	63	0.011
PF00400.33	WD40	70	106	0.017
PF00400.33	WD40	113	149	0.16
PF12894.8	ANAPC4_WD40	171	224	5.90E-06
PF00400.33	WD40	254	289	2.00E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K12602	WDR61, REC14, SKI8	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.208
	SRR3591706	second leaf	12.725
	SRR3591707	mature leaf	10.686
	SRR3591708	Shoot apex	36.973
	SRR3591709	Stem	17.552
	SRR3591710	White floral bud	12.827
	SRR3591711	White flower	11.994
	SRR3591712	Green floral bud	20.632
	SRR3591713	Yellow flower	8.793
SRP173429	SRR8316895	Juvenile bud stage	19.709
	SRR8316896	Juvenile bud stage	23.300
	SRR8316897	Juvenile bud stage	10.922
	SRR8316894	Third green stage	7.790
	SRR8316900	Third green stage	25.553
	SRR8316901	Third green stage	21.203
	SRR8316898	Complete white stage	5.620
	SRR8316899	Complete white stage	32.499
	SRR8316903	Complete white stage	8.788
	SRR8316902	Silver flowering stage	4.836
	SRR8316904	Silver flowering stage	5.043
	SRR8316905	Silver flowering stage	3.105
	SRR8316906	Gold flowering stage	9.713
	SRR8316907	Gold flowering stage	8.808
	SRR8316908	Gold flowering stage	11.406
SRP132670	SRR6706286	Control	19.585
	SRR6706287	Light intensity 50%	18.425
	SRR6706288	Light intensity 20%	19.149
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.832
	CNS0095593	Slightly white alabastrum(diploid) 2	29.404
	CNS0095594	Slightly white alabastrum(diploid) 3	23.042
	CNS0095595	Whole white alabastrum(diploid) 2	21.335
	CNS0095596	Whole white alabastrum(diploid) 3	15.454
	CNS0095597	Whole white alabastrum(diploid) 4	17.638
	CNS0095598	Silvery flower (diploied) 1	21.752
	CNS0095599	Silvery flower (diploied) 2	21.212
	CNS0095600	Silvery flower (diploied) 3	20.048
	CNS0095601	Golden flower (diploid) 1	19.653
	CNS0095602	Golden flower (diploid) 2	18.884
	CNS0095603	Golden flower (diploid) 3	20.007
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.606
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.644
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.873
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.137
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.127
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.576
	CNS0095610	Silvery flower (tetraploid) 1	13.778
	CNS0095611	Silvery flower (tetraploid) 2	23.242
	CNS0095612	Silvery flower (tetraploid) 3	12.012
	CNS0095613	Golden flower (tetraploid) 1	6.671
	CNS0095614	Golden flower (tetraploid) 2	13.833
	CNS0095615	Golden flower (tetraploid) 3	4.227
CRA001975	CRR073297	Stem 1	31.547
	CRR073298	Stem 2	31.014
	CRR073299	Stem 3	47.113
	CRR073300	Leaf 1	34.152
	CRR073301	Leaf 2	35.356
	CRR073302	Leaf 3	39.230
	CRR073303	Juvenile bud 1	37.479
	CRR073304	Juvenile bud 2	29.141
	CRR073305	Juvenile bud 3	38.856
	CRR073306	Third green 1	3.906
	CRR073307	Third green 2	4.517
	CRR073308	Third green 3	3.907
	CRR073309	Second white 1	6.904
	CRR073310	Second white 2	3.425
	CRR073311	Second white 3	4.315
	CRR073312	Silver flowering 1	1.501
	CRR073313	Silver flowering 2	3.299
	CRR073314	Silver flowering 3	3.717
	CRR073315	Gold flowering 1	23.513
	CRR073316	Gold flowering 2	26.651
	CRR073317	Gold flowering 3	26.635
	CRR073318	Tawny withering 1	39.304
	CRR073319	Tawny withering 2	29.841
	CRR073320	Tawny withering 3	36.969