Gene detail

Detail information of GWHGAAZE015195

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009611770.1	9.369E-142	PREDICTED: proline-rich receptor-like protein kinase PERK15 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9LV48\|PERK1_ARATH	4E-124	Proline-rich receptor-like protein kinase PERK1
trEMBL	tr\|M0ZRH8\|M0ZRH8_SOLTU	4E-137	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400006516}
TAIR10	AT1G52290.1	2E-93	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	27627923	27630558	+
GWHAAZE00000004	mRNA	27627923	27630558	+
GWHAAZE00000004	exon	27627923	27627968	+
GWHAAZE00000004	exon	27628236	27628322	+
GWHAAZE00000004	exon	27628396	27628466	+
GWHAAZE00000004	exon	27629072	27629148	+
GWHAAZE00000004	exon	27629277	27629424	+
GWHAAZE00000004	exon	27629735	27629896	+
GWHAAZE00000004	exon	27630322	27630558	+
GWHAAZE00000004	CDS	27627923	27627968	+
GWHAAZE00000004	CDS	27628236	27628322	+
GWHAAZE00000004	CDS	27628396	27628466	+
GWHAAZE00000004	CDS	27629072	27629148	+
GWHAAZE00000004	CDS	27629277	27629424	+
GWHAAZE00000004	CDS	27629735	27629896	+
GWHAAZE00000004	CDS	27630322	27630558	+

Transcript Sequence
>GWHTAAZE015211 ATGGCATTGGGGAAGCTTGCTATAAATACCCCTGCCCATTCCATTAGGAATGGGCAAGCTCCATTGAACTGGGAAACTAGGATGAGAATTGCTCTAGGAGCTGCAAAAGGATTGGCATATTTGCATGAGAGCTGTCAGCCCAAGATTATACATCGTGATATCAAGGCCGCAAACATTCTTCTTGATAACAATTTTGAGGCAAAGCTTGCAGATTTTGGACTTGCGCATATCACTTCTGATATTGATACTCATGTCTCTACCCGTATAATGGGGACTTTTGGTTATTTAGCTCCAGAGTATGCTCTATCGGGGAAACTAACTCATAAGTCAGATGTCTTCTCCTTCGGGGTTGTGCTTCTTGAATTAATCACCGGACGGCGACCCATTGATAAAGCTCAATTCTTTGTGGATGAAAATATTGTTGACTGGGCGAGGCCTTTGATGGCTCAAGGTTTGGATGATGGCAACTTTGATTCTTTAGCTGATGCAAGATTGCACAAGAATTATGACTCTGAAGAGATGGTTCGTATGGTTGCTTGTGCTGCTGTTTGTGTTCGTCATTTGGCACGGCGCAGACCTCGAATGAGCCAGATAGTTCGAACTTTAGAGGGGAATATGTCTCTGGATGATTTAAACGAGGGCAATAGACCCGGACACAGTACTATATATGGTTCTCATGAAATTGCAGATTATGACACTGCCCAGTACAAGGAGGACATGAAGAAATTCGCCAAGATGGTACTTGAAGGCCAGGACTACAACAACTCTAGTGAGTGCAGCAGTGCCATCAGTGATTTTGGCCAACATCCGTCTGGCTCTACCCACTGA

Network for GWHGAAZE015195

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	25	132	1.90E-26

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_PERK-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.251
	SRR3591706	second leaf	38.723
	SRR3591707	mature leaf	40.441
	SRR3591708	Shoot apex	15.463
	SRR3591709	Stem	153.901
	SRR3591710	White floral bud	0.364
	SRR3591711	White flower	0.514
	SRR3591712	Green floral bud	1.064
	SRR3591713	Yellow flower	0.687
SRP173429	SRR8316895	Juvenile bud stage	0.656
	SRR8316896	Juvenile bud stage	0.905
	SRR8316897	Juvenile bud stage	7.610
	SRR8316894	Third green stage	0.273
	SRR8316900	Third green stage	0.675
	SRR8316901	Third green stage	0.909
	SRR8316898	Complete white stage	0.416
	SRR8316899	Complete white stage	0.501
	SRR8316903	Complete white stage	0.367
	SRR8316902	Silver flowering stage	1.113
	SRR8316904	Silver flowering stage	0.231
	SRR8316905	Silver flowering stage	0.355
	SRR8316906	Gold flowering stage	3.142
	SRR8316907	Gold flowering stage	0.863
	SRR8316908	Gold flowering stage	8.199
SRP132670	SRR6706286	Control	0.687
	SRR6706287	Light intensity 50%	0.908
	SRR6706288	Light intensity 20%	0.866
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.211
	CNS0095593	Slightly white alabastrum(diploid) 2	0.050
	CNS0095594	Slightly white alabastrum(diploid) 3	0.861
	CNS0095595	Whole white alabastrum(diploid) 2	0.434
	CNS0095596	Whole white alabastrum(diploid) 3	0.445
	CNS0095597	Whole white alabastrum(diploid) 4	0.372
	CNS0095598	Silvery flower (diploied) 1	0.586
	CNS0095599	Silvery flower (diploied) 2	0.482
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.225
	CNS0095602	Golden flower (diploid) 2	0.065
	CNS0095603	Golden flower (diploid) 3	0.161
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.608
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.041
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.170
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.229
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.180
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.079
	CNS0095610	Silvery flower (tetraploid) 1	1.703
	CNS0095611	Silvery flower (tetraploid) 2	0.094
	CNS0095612	Silvery flower (tetraploid) 3	0.154
	CNS0095613	Golden flower (tetraploid) 1	0.194
	CNS0095614	Golden flower (tetraploid) 2	0.730
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.098
	CRR073298	Stem 2	0.714
	CRR073299	Stem 3	0.092
	CRR073300	Leaf 1	0.031
	CRR073301	Leaf 2	0.514
	CRR073302	Leaf 3	0.094
	CRR073303	Juvenile bud 1	0.525
	CRR073304	Juvenile bud 2	0.117
	CRR073305	Juvenile bud 3	0.062
	CRR073306	Third green 1	0.257
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.095
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.083
	CRR073312	Silver flowering 1	0.091
	CRR073313	Silver flowering 2	0.013
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	5.431
	CRR073316	Gold flowering 2	7.951
	CRR073317	Gold flowering 3	5.155
	CRR073318	Tawny withering 1	0.497
	CRR073319	Tawny withering 2	1.468
	CRR073320	Tawny withering 3	0.465