Gene detail

Detail information of GWHGAAZE015144

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG20222.1	0	putative inactive receptor kinase -like protein [Gossypium arboreum]
Swissprot	tr\|Q9LP77\|Y1848_ARATH	0	Probable inactive receptor kinase At1g48480 (Precursor)
trEMBL	tr\|F6GSP3\|F6GSP3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43298.1}
TAIR10	AT3G02880.1	8E-158	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	26174078	26177461	+
GWHAAZE00000004	mRNA	26174078	26177461	+
GWHAAZE00000004	exon	26174078	26175353	+
GWHAAZE00000004	exon	26176810	26176913	+
GWHAAZE00000004	exon	26176997	26177461	+
GWHAAZE00000004	CDS	26174078	26175353	+
GWHAAZE00000004	CDS	26176810	26176913	+
GWHAAZE00000004	CDS	26176997	26177461	+

Transcript Sequence
>GWHTAAZE015160 TTTCACCCAAAAACAAAAGCTCAAATGAAACCTTATCTCGTCCTTCTCCTACTCCTCTGTCTTTTCTTCTCCACCGGAAAACCCGACCTAGTCTCCGACAGAGCTGCCCTCCTCTCCCTCCGTTCTGCCGTTGGCGGCAGATCCCTCCTCTGGAACCTCTCCCAACCCACCCCATGCTCATGGACCGGAGTAATCTGCTCCTCCAACTCCGTCACAGAGCTCCGCCTCCCCGGCATGGGCCTCTCCGGTCAACTCCCCGCCAACACCCTCGGCAACCTCTCCAGACTCCACACCCTCTCCCTCCGCTTCAATGCCCTCTTGGGCCCACTCCCTTCCGACCTCTCCGCCATTAATGATCTCCGAAACTTATACCTCCAAGGCAACCTCTTCTCCGGCCCAATTCCAAACTTTCTCTTCACACTTCCTAATCTCGTTCGCCTTAATTTAGCTTCCAACAATTTCTCCGGCGAAATCTCCACTTCCTTTAATAATTTGACCCGGTTGGCAACTCTCTATTTGGAACACAACAAACTCACCGGAACTATCCCGGATCTGACACAGCCGAGTCTGGTCCAGTTAAATGTTTCGGACAATTTGTTAACTGGGTCGGTCCCGGCTAGATTTTCAGGTCAACCCGCCTCCGCCTTCGGGGGTAACTCCCTCTGTGGGCCCCCGCTTCGTTCTTGTAATGGAACCGGGGGTGGTGGCAAAAAGCTCTCCGGTGGAGCAATTGCCGGAATAGTAATTGGTTCTGTAATTGGGGTTTTGTTAATTCTCTTCCTTGTGATATTTTTGTGCTGTCGTAAAAAGAAAAACAAGAATGTGAGTAGTAAAGAAATTGCGGCAGTGAAGGTAGATATGCCGCCCGAGAAATCTGGTGACGGTGGAGATAGTTTGAGCAGTGGGTTTGCTGCTCCGGCGATTAAGGATATGGGGGAGGCAAAGGGTGACGGTGGAAACAAGCATTTGATATTTTTTGCGAAGGCCAATAGGACATTTGATTTGGAGGATTTGTTGCGGGCTTCGGCCGAGGTATTGGGGAAAGGGACTTTTGGGACGGCGTACAAGGCGGTGCTGGAGATGGGGACGGTGGTGGCGGTGAAGAGATTGAAGGATGTGACTCTACCGGAGAAAGAATTTAGAGAGAAGATTGAGGGAGTTGGGGGTATGGATCATGAGAGTTTGGTGCCTTTAAGGGCTTATTATTTTAGTGGAGATGAGAAGCTTCTTGTTTATGATTATATGCCTATGGGAAGCTTATCTGCTCTTTTACATGGAAATAGAGGAGCCAGTCGGACACCACTAAATTGGGAGACACGCTCGGGAATTGCACTCGGCGCAGCCCGCGGAATAGCCTACCTACACGGGCGGGGCCCGAATCTCGTGGGTCCTGGTGCATCTCCAACCCGCGTTGCCGGGTACCGGGCTCCGGAGGTGACCGACCCTCGAAAAGTCTCCCAAAAAGCCGATGTGTATAGCTTTGGAGTGTTACTACTCGAGCTCCTAACCGGCAAGGCCCCGACCCACGCCCTTTTAAATGAGGAGGGTGTGGACCTACCTAGGTGGGTCCAGTCTGTGGTTCGAGAGGAATGGACCGTTGAGGTTTTCGACCTTGAACTTTTAAGGTACCAAAATGTTGAGGAAGATATGGTTCAGCTCCTTCAACTTGCTATCGATTGTTCGGCTCAGTACCCCGATAAACGGCCCACAATGGCTGAAGTTGTTAAACAGATAGAGGAGCTTTGTAGGTCCACACTACAGCGGGACCCGCATACCGATACAATCGAAGGTCCAGATGAGCCACAGGTTCGGTCTGTTGATTCGGGTCCGCCCATTGATGATTGA

Network for GWHGAAZE015144

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	32	67	2.10E-07
PF07714.18	PK_Tyr_Ser-Thr	344	456	8.60E-12
PF00069.26	Pkinase	473	576	9.80E-10

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	101.351
	SRR3591706	second leaf	14.764
	SRR3591707	mature leaf	8.607
	SRR3591708	Shoot apex	27.641
	SRR3591709	Stem	54.850
	SRR3591710	White floral bud	19.565
	SRR3591711	White flower	9.766
	SRR3591712	Green floral bud	28.045
	SRR3591713	Yellow flower	3.122
SRP173429	SRR8316895	Juvenile bud stage	27.290
	SRR8316896	Juvenile bud stage	35.960
	SRR8316897	Juvenile bud stage	17.595
	SRR8316894	Third green stage	10.729
	SRR8316900	Third green stage	30.578
	SRR8316901	Third green stage	36.394
	SRR8316898	Complete white stage	4.725
	SRR8316899	Complete white stage	37.912
	SRR8316903	Complete white stage	10.773
	SRR8316902	Silver flowering stage	4.424
	SRR8316904	Silver flowering stage	5.164
	SRR8316905	Silver flowering stage	3.098
	SRR8316906	Gold flowering stage	6.067
	SRR8316907	Gold flowering stage	6.249
	SRR8316908	Gold flowering stage	8.338
SRP132670	SRR6706286	Control	53.785
	SRR6706287	Light intensity 50%	52.817
	SRR6706288	Light intensity 20%	53.893
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.451
	CNS0095593	Slightly white alabastrum(diploid) 2	27.910
	CNS0095594	Slightly white alabastrum(diploid) 3	19.317
	CNS0095595	Whole white alabastrum(diploid) 2	17.878
	CNS0095596	Whole white alabastrum(diploid) 3	12.217
	CNS0095597	Whole white alabastrum(diploid) 4	16.080
	CNS0095598	Silvery flower (diploied) 1	20.141
	CNS0095599	Silvery flower (diploied) 2	15.267
	CNS0095600	Silvery flower (diploied) 3	13.780
	CNS0095601	Golden flower (diploid) 1	19.770
	CNS0095602	Golden flower (diploid) 2	18.977
	CNS0095603	Golden flower (diploid) 3	18.083
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.588
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.740
	CNS0095606	Slightly white alabastrum(tetraploid) 3	41.597
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.495
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.888
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.181
	CNS0095610	Silvery flower (tetraploid) 1	5.811
	CNS0095611	Silvery flower (tetraploid) 2	5.262
	CNS0095612	Silvery flower (tetraploid) 3	12.202
	CNS0095613	Golden flower (tetraploid) 1	2.447
	CNS0095614	Golden flower (tetraploid) 2	4.800
	CNS0095615	Golden flower (tetraploid) 3	3.834
CRA001975	CRR073297	Stem 1	69.054
	CRR073298	Stem 2	63.336
	CRR073299	Stem 3	74.541
	CRR073300	Leaf 1	70.415
	CRR073301	Leaf 2	82.302
	CRR073302	Leaf 3	73.124
	CRR073303	Juvenile bud 1	64.574
	CRR073304	Juvenile bud 2	62.261
	CRR073305	Juvenile bud 3	129.387
	CRR073306	Third green 1	54.466
	CRR073307	Third green 2	74.405
	CRR073308	Third green 3	61.354
	CRR073309	Second white 1	24.623
	CRR073310	Second white 2	13.828
	CRR073311	Second white 3	18.174
	CRR073312	Silver flowering 1	46.795
	CRR073313	Silver flowering 2	46.988
	CRR073314	Silver flowering 3	41.484
	CRR073315	Gold flowering 1	54.255
	CRR073316	Gold flowering 2	56.262
	CRR073317	Gold flowering 3	63.421
	CRR073318	Tawny withering 1	140.524
	CRR073319	Tawny withering 2	88.924
	CRR073320	Tawny withering 3	179.804