Detail information of GWHGAAZE015140


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004288594.10PREDICTED: glutamine synthetase nodule isozyme-like [Fragaria vesca subsp. vesca]
Swissprottr|P32289|GLNA_VIGAC0Glutamine synthetase nodule isozyme
trEMBLtr|A0A067K0M8|A0A067K0M8_JATCU0Glutamine synthetase {ECO:0000256|RuleBase:RU004356}
TAIR10AT5G37600.10glutamine synthase clone R1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene2602359226028796-
GWHAAZE00000004mRNA2602359226028796-
GWHAAZE00000004exon2602359226023744-
GWHAAZE00000004exon2602439826024557-
GWHAAZE00000004exon2602470026024737-
GWHAAZE00000004exon2602488826024941-
GWHAAZE00000004exon2602505326025127-
GWHAAZE00000004exon2602526526025393-
GWHAAZE00000004exon2602622726026314-
GWHAAZE00000004exon2602682826026934-
GWHAAZE00000004exon2602704026027088-
GWHAAZE00000004exon2602789126027994-
GWHAAZE00000004exon2602811026028149-
GWHAAZE00000004exon2602872326028796-
GWHAAZE00000004CDS2602872326028796-
GWHAAZE00000004CDS2602811026028149-
GWHAAZE00000004CDS2602789126027994-
GWHAAZE00000004CDS2602704026027088-
GWHAAZE00000004CDS2602682826026934-
GWHAAZE00000004CDS2602622726026314-
GWHAAZE00000004CDS2602526526025393-
GWHAAZE00000004CDS2602505326025127-
GWHAAZE00000004CDS2602488826024941-
GWHAAZE00000004CDS2602470026024737-
GWHAAZE00000004CDS2602439826024557-
GWHAAZE00000004CDS2602359226023744-
Transcript Sequence

Network for GWHGAAZE015140

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03951.20Gln-synt_N22975.10E-10
PF00120.25Gln-synt_C1683471.90E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01915glnA, GLUL Metabolic pathways map01100
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of amino acidsmap01230
Glyoxylate and dicarboxylate metabolismmap00630
Nitrogen metabolismmap00910
Alanine, aspartate and glutamate metabolismmap00250
Arginine biosynthesismap00220
Two-component systemmap02020
Necroptosismap04217
Glutamatergic synapsemap04724
GABAergic synapsemap04727

Gene Ontology

GO term OntologyName
GO:0006542biological_processglutamine biosynthetic process
GO:0006807biological_processnitrogen compound metabolic process
GO:0004356molecular_functionglutamate-ammonia ligase activity
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf261.032
SRR3591706second leaf115.050
SRR3591707mature leaf1521.573
SRR3591708Shoot apex183.023
SRR3591709Stem268.212
SRR3591710White floral bud100.464
SRR3591711White flower120.095
SRR3591712Green floral bud122.078
SRR3591713Yellow flower85.734
SRP173429 SRR8316895Juvenile bud stage 93.003
SRR8316896Juvenile bud stage 116.610
SRR8316897Juvenile bud stage 52.565
SRR8316894Third green stage 47.992
SRR8316900Third green stage 133.502
SRR8316901Third green stage 129.263
SRR8316898Complete white stage 60.465
SRR8316899Complete white stage 136.510
SRR8316903Complete white stage 85.599
SRR8316902Silver flowering stage45.461
SRR8316904Silver flowering stage66.316
SRR8316905Silver flowering stage36.437
SRR8316906Gold flowering stage 100.537
SRR8316907Gold flowering stage 99.140
SRR8316908Gold flowering stage 70.269
SRP132670SRR6706286Control167.460
SRR6706287Light intensity 50%164.729
SRR6706288Light intensity 20%177.253
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1149.679
CNS0095593Slightly white alabastrum(diploid) 2172.086
CNS0095594Slightly white alabastrum(diploid) 3139.716
CNS0095595Whole white alabastrum(diploid) 2128.804
CNS0095596Whole white alabastrum(diploid) 3112.778
CNS0095597Whole white alabastrum(diploid) 4114.768
CNS0095598Silvery flower (diploied) 1268.075
CNS0095599Silvery flower (diploied) 2250.646
CNS0095600Silvery flower (diploied) 3115.808
CNS0095601Golden flower (diploid) 1268.279
CNS0095602Golden flower (diploid) 2136.052
CNS0095603Golden flower (diploid) 3131.514
CNS0095604Slightly white alabastrum(tetraploid) 1212.764
CNS0095605Slightly white alabastrum(tetraploid) 2181.689
CNS0095606Slightly white alabastrum(tetraploid) 3314.449
CNS0095607Whole white alabastrum(tetraploid) 1143.237
CNS0095608Whole white alabastrum(tetraploid) 2104.816
CNS0095609Whole white alabastrum(tetraploid) 3181.690
CNS0095610Silvery flower (tetraploid) 1126.192
CNS0095611Silvery flower (tetraploid) 2107.184
CNS0095612Silvery flower (tetraploid) 3107.000
CNS0095613Golden flower (tetraploid) 158.733
CNS0095614Golden flower (tetraploid) 289.581
CNS0095615Golden flower (tetraploid) 342.614
CRA001975CRR073297Stem 1172.253
CRR073298Stem 2159.245
CRR073299Stem 3188.343
CRR073300Leaf 1166.826
CRR073301Leaf 2179.424
CRR073302Leaf 3197.568
CRR073303Juvenile bud 1169.322
CRR073304Juvenile bud 2155.844
CRR073305Juvenile bud 3164.887
CRR073306Third green 1133.746
CRR073307Third green 2133.842
CRR073308Third green 3122.707
CRR073309Second white 185.615
CRR073310Second white 259.848
CRR073311Second white 348.703
CRR073312Silver flowering 134.783
CRR073313Silver flowering 244.953
CRR073314Silver flowering 339.158
CRR073315Gold flowering 1852.104
CRR073316Gold flowering 2999.550
CRR073317Gold flowering 3943.431
CRR073318Tawny withering 1374.645
CRR073319Tawny withering 2421.020
CRR073320Tawny withering 3261.691