Gene detail

Detail information of GWHGAAZE015134

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002264144.1	PREDICTED: nicastrin [Vitis vinifera]
Swissprot	tr\|Q8GUM5\|NICA_ARATH	Nicastrin (Precursor)
trEMBL	tr\|D7TSK0\|D7TSK0_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI33472.3}
TAIR10	AT3G52640.1	Zn-dependent exopeptidases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	25870520	25883703	+
GWHAAZE00000004	mRNA	25870520	25883703	+
GWHAAZE00000004	exon	25870520	25870664	+
GWHAAZE00000004	exon	25870768	25870882	+
GWHAAZE00000004	exon	25874689	25874777	+
GWHAAZE00000004	exon	25874870	25874946	+
GWHAAZE00000004	exon	25875141	25875218	+
GWHAAZE00000004	exon	25876035	25876106	+
GWHAAZE00000004	exon	25876211	25876284	+
GWHAAZE00000004	exon	25877005	25877137	+
GWHAAZE00000004	exon	25877253	25877324	+
GWHAAZE00000004	exon	25878586	25878705	+
GWHAAZE00000004	exon	25879678	25879749	+
GWHAAZE00000004	exon	25880767	25880907	+
GWHAAZE00000004	exon	25881853	25881937	+
GWHAAZE00000004	exon	25882044	25882482	+
GWHAAZE00000004	exon	25883439	25883703	+
GWHAAZE00000004	CDS	25870520	25870664	+
GWHAAZE00000004	CDS	25870768	25870882	+
GWHAAZE00000004	CDS	25874689	25874777	+
GWHAAZE00000004	CDS	25874870	25874946	+
GWHAAZE00000004	CDS	25875141	25875218	+
GWHAAZE00000004	CDS	25876035	25876106	+
GWHAAZE00000004	CDS	25876211	25876284	+
GWHAAZE00000004	CDS	25877005	25877137	+
GWHAAZE00000004	CDS	25877253	25877324	+
GWHAAZE00000004	CDS	25878586	25878705	+
GWHAAZE00000004	CDS	25879678	25879749	+
GWHAAZE00000004	CDS	25880767	25880907	+
GWHAAZE00000004	CDS	25881853	25881937	+
GWHAAZE00000004	CDS	25882044	25882482	+
GWHAAZE00000004	CDS	25883439	25883703	+

Transcript Sequence
>GWHTAAZE015150 TTTGTATTTATTGAAATTTGGACAGCTTCAGAAAAGGCAAATTTGTTGGAGTCAGTTCCTGATCTTGAGAAGTCAATGTACTTGGTTGTTGATGGATATCCATGTGTACGACTACTCAACCTTTCTGGGGAGATTGGTTGTTCAAATCCTGGCCGTGAGAAAGTTTTAGCTCCAATTGTAAGATACAAGAATGCCAACAACTTGGTTCAGTTATCTGCAGTACTGGTGTCATTGGATGAATTTGACAATTTATTTTTAAGAGTATCAATTGATTCAAATTTTGCGAAGAATGTAGCCGGTGTATTAGTTGAATCAGGAGCTCAAAACAAGTTAAAAGGCAAGAGATGCAGATTGTCTCCAGACAAGAAGTTTCCACTAGATGAATTTTCTCCTTACCAAAGCAATTCTTATGAATGGAACCCAACTGGTTCTGGGATTATGTGGAGAGCTTATGATTTTCCTGTCTTCTTACTTTCTGAGGGTAGCACGTCGACCTTGCAGGAGGTTGCGGCGAAGAATGAGAGGACCAAGAAAGCTTACAATGCTGTTGTGGCTGAATTTAATCTGGTGATGCAGACAACAAAATCTGGAACTCACGATTCAGAGTCTTGTTTGAATGAAGGGACTTGTCTTCCACTGGGGGGTTACAGTGTTTGGTCGGCACTTCCACCAATTAGTATTTCATCGCCAGAAAGTTCCAAGCCCATCATATTAGCAATGACATCCATGGACGCTGCTTCGTTTTTCCGTGACAAAAGCCTTGGCGCAGATTCCCCAATATCTGGGCTGATCTCTTTGCTGGCTGCAGTGGATGCTCTTTCACGTGTTGATGGTTTAAATAACCTACCTAAACAGCTTGTTTTTGGGGTTTTCACTGGGGAGGCTTGGGGCTACCTTGGTAGCCGGAGATTTCTTCATGAGCTTGATCAACAATCAGGTTCTGTTAGCGGCCTTAACAGCACATTGATTGAAACGGTTATTGAAATTGGCTCTGTTGGAAAGGGTTTTGATCAGGGAGTCAAAACCTTTTTTGCTCATACATCAGGGGTTTCCTCTGCCACAAATGTGACATTAAGTGCCTTCAAACAAGCTCAAAATTCACTTAAATCTGACGCCATTAAGTTCTCAACAGCAAATGCATCTAACCCTGGAATACCTCCGGCATCATTGATGGCATTCATGAAGAAGAATCCTAAAACTTCCGGGATTGTCATAGAAGATTTCGATACTGTCTTCAAAAATAAATTCTACCACAGTCATCTTGATAACCAGTCTAATATTAACTCTTCGGCCATAGTGGCAGCATCTTCCCTTGTTGCCCGATCCCTTTACATTCTCGCCAGTAATAAAACAGATTTGAGTGCTTCTGCTCTAAATTCGGTGAAGGTGAACGCCTCTTTGGTTGAAGAACTTTTGGGTTGCTTGTTAAACTGTGAACCCGGGTTATCGTGTGAGCTGGTCAAGCACTATATTTCACCTATGGGTACTTGCCCAAGCCATTATGTAGGTGTCATTTTGGGGGAACCTTCATCCACGCCTTACCTTCCTTATGTGAGTGACACTTCGAGGTTTGTGTGGAATTTTCTTGCCGAGAAAACATCAATCCCATCAAAGAATGCTAGTTCTTGCCCAAAAGATTGCAGCGGAACAGGTGAAATGTGCATAAGAGCGGAGACCGATGGCAAAGGGGTCTGTGTTACATCCACTACCAGGTATGTTCCAGCATACTCTACGCGATTGAAGTCTGAGTCTGGAACATGGAAGGTGTTGCCCCGTAATTCATCAGATCCAATGGGGCTAGAAGACGCTGTGTGGACAGAAAGCAACTGGGACACAATTCAGCTACGTGTGTACTCTGTCCAGGATGCTGCTTATGATCGTCTGATTCTTCTGGCCGGAATTGCTGTTACAGTGCTAGCTTACACTGCAATAGTGGTAACCAGAGCTTTCATCACAAAAGCCCTGAAGCAAGATTGA

Network for GWHGAAZE015134

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF18266.2	Ncstrn_small	34	193	4.90E-38
PF05450.16	Nicastrin	235	444	1.20E-63

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06171	NCSTN	Notch signaling pathway	map04330

Gene Ontology

GO term	Ontology	Name
GO:0016485	biological_process	protein processing
GO:0016021	cellular_component	integral component of membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.587
	SRR3591706	second leaf	25.786
	SRR3591707	mature leaf	16.307
	SRR3591708	Shoot apex	28.018
	SRR3591709	Stem	22.280
	SRR3591710	White floral bud	14.734
	SRR3591711	White flower	18.196
	SRR3591712	Green floral bud	19.273
	SRR3591713	Yellow flower	14.909
SRP173429	SRR8316895	Juvenile bud stage	10.605
	SRR8316896	Juvenile bud stage	20.158
	SRR8316897	Juvenile bud stage	10.979
	SRR8316894	Third green stage	7.602
	SRR8316900	Third green stage	19.088
	SRR8316901	Third green stage	16.398
	SRR8316898	Complete white stage	5.193
	SRR8316899	Complete white stage	16.810
	SRR8316903	Complete white stage	9.652
	SRR8316902	Silver flowering stage	6.412
	SRR8316904	Silver flowering stage	9.450
	SRR8316905	Silver flowering stage	5.095
	SRR8316906	Gold flowering stage	16.077
	SRR8316907	Gold flowering stage	18.147
	SRR8316908	Gold flowering stage	19.718
SRP132670	SRR6706286	Control	13.722
	SRR6706287	Light intensity 50%	13.454
	SRR6706288	Light intensity 20%	15.673
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.016
	CNS0095593	Slightly white alabastrum(diploid) 2	13.075
	CNS0095594	Slightly white alabastrum(diploid) 3	14.488
	CNS0095595	Whole white alabastrum(diploid) 2	10.871
	CNS0095596	Whole white alabastrum(diploid) 3	12.675
	CNS0095597	Whole white alabastrum(diploid) 4	10.143
	CNS0095598	Silvery flower (diploied) 1	16.479
	CNS0095599	Silvery flower (diploied) 2	13.546
	CNS0095600	Silvery flower (diploied) 3	10.308
	CNS0095601	Golden flower (diploid) 1	12.371
	CNS0095602	Golden flower (diploid) 2	13.484
	CNS0095603	Golden flower (diploid) 3	13.980
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.789
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.517
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.210
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.518
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.746
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.469
	CNS0095610	Silvery flower (tetraploid) 1	9.846
	CNS0095611	Silvery flower (tetraploid) 2	11.766
	CNS0095612	Silvery flower (tetraploid) 3	9.915
	CNS0095613	Golden flower (tetraploid) 1	7.685
	CNS0095614	Golden flower (tetraploid) 2	12.388
	CNS0095615	Golden flower (tetraploid) 3	10.429
CRA001975	CRR073297	Stem 1	19.460
	CRR073298	Stem 2	16.666
	CRR073299	Stem 3	13.817
	CRR073300	Leaf 1	17.939
	CRR073301	Leaf 2	16.787
	CRR073302	Leaf 3	9.101
	CRR073303	Juvenile bud 1	11.105
	CRR073304	Juvenile bud 2	7.001
	CRR073305	Juvenile bud 3	10.098
	CRR073306	Third green 1	2.773
	CRR073307	Third green 2	2.863
	CRR073308	Third green 3	2.247
	CRR073309	Second white 1	2.212
	CRR073310	Second white 2	4.352
	CRR073311	Second white 3	4.309
	CRR073312	Silver flowering 1	2.855
	CRR073313	Silver flowering 2	3.418
	CRR073314	Silver flowering 3	3.837
	CRR073315	Gold flowering 1	9.114
	CRR073316	Gold flowering 2	13.783
	CRR073317	Gold flowering 3	5.701
	CRR073318	Tawny withering 1	18.803
	CRR073319	Tawny withering 2	14.853
	CRR073320	Tawny withering 3	16.321