Gene detail

Detail information of GWHGAAZE015123

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN77882.1	4.0408E-87	hypothetical protein VITISV_024027 [Vitis vinifera]
Swissprot	tr\|Q93WJ9\|KAN1_ARATH	6E-51	Transcription repressor KAN1
trEMBL	tr\|A5AFB9\|A5AFB9_VITVI	2E-87	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN77882.1}
TAIR10	AT5G16560.1	4E-38	Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	25545452	25546620	-
GWHAAZE00000004	mRNA	25545452	25546620	-
GWHAAZE00000004	exon	25545452	25545454	-
GWHAAZE00000004	exon	25545529	25545605	-
GWHAAZE00000004	exon	25545822	25546620	-
GWHAAZE00000004	CDS	25545822	25546620	-
GWHAAZE00000004	CDS	25545529	25545605	-
GWHAAZE00000004	CDS	25545452	25545454	-

Transcript Sequence
>GWHTAAZE015139 ATGCCCTTGGAAGGTATTTTCATAGAACCCTCTTCGAACCCTCTACCGGATCTGTCTCTCCACATCAGTTTGCCCAACAGCTCGTCTTCTTCAATTCGCAAAGCCGACATTGAGCTCTCTTTATCGCACCCTTCGAATGCGCTACATACTGATCAAACTTGCCAAATCCGAAGTCACAGAAACTTCCAGACAGAAGCTCAAGAACAACAACATCAACAACAGCAGCAGCAGCAACAACACTCATTAAAACAATACCAACAACGCCACAACATTTACCACCCAAACAGCCCCTTAAATCACATAAACCATGGGGTCTCCCTCCTTGATGTATCATCATCTGACAGCCTACGGCCAATAAAGGGCATCCCGGTCTATCACAACCGTCCATTCCCCTTTGTGCCTAATCTGGAACACACGAGAGAGAAAGATCCGTCCAAGATGTGCTTCTACCCCATCTCGTCTTATCCGTCTTCTCTTGGCTCTGGTTCAGTCGCCCACGCTCCTTATCTGGATCGTGGCTCAATCCTGAACTCAGAGCCGAGTAACGGGTCACTGCCAGGATACAGGATACCTGGCGGCGGTAGTGGTGGAACAAGATTGAATGGATTCTCGTACCACCACCACAATCAGTATGGCTTGGGGCCGTCTGATCAGGTGTCTCATCATCATGGGATGATGAGATCGAGATTTCTGCCCAAGATGCCTGCAAAGCGGAGTATGAGAGCTCCGAGGATGCGCTGGACCAGCACCCTCCATGCCCGGTTTGTACATGCGGTTGAGCTCCTAGGTGGCCATGAAAGGGCAACACCAAAATCAGTATTAGAGCTGATGGATGTAAAAGATCTCACACTGGCACATGTGAAGAGCCATTTACAGTAA

Network for GWHGAAZE015123

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GARP-G2-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.400
	SRR3591706	second leaf	6.080
	SRR3591707	mature leaf	3.484
	SRR3591708	Shoot apex	9.551
	SRR3591709	Stem	5.291
	SRR3591710	White floral bud	12.563
	SRR3591711	White flower	7.928
	SRR3591712	Green floral bud	11.973
	SRR3591713	Yellow flower	1.830
SRP173429	SRR8316895	Juvenile bud stage	5.300
	SRR8316896	Juvenile bud stage	5.801
	SRR8316897	Juvenile bud stage	2.934
	SRR8316894	Third green stage	5.064
	SRR8316900	Third green stage	8.788
	SRR8316901	Third green stage	8.570
	SRR8316898	Complete white stage	3.844
	SRR8316899	Complete white stage	13.781
	SRR8316903	Complete white stage	7.735
	SRR8316902	Silver flowering stage	1.850
	SRR8316904	Silver flowering stage	4.106
	SRR8316905	Silver flowering stage	1.362
	SRR8316906	Gold flowering stage	1.977
	SRR8316907	Gold flowering stage	2.912
	SRR8316908	Gold flowering stage	2.798
SRP132670	SRR6706286	Control	14.925
	SRR6706287	Light intensity 50%	15.849
	SRR6706288	Light intensity 20%	16.725
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.563
	CNS0095593	Slightly white alabastrum(diploid) 2	3.022
	CNS0095594	Slightly white alabastrum(diploid) 3	2.295
	CNS0095595	Whole white alabastrum(diploid) 2	4.717
	CNS0095596	Whole white alabastrum(diploid) 3	3.408
	CNS0095597	Whole white alabastrum(diploid) 4	3.853
	CNS0095598	Silvery flower (diploied) 1	6.407
	CNS0095599	Silvery flower (diploied) 2	5.269
	CNS0095600	Silvery flower (diploied) 3	7.169
	CNS0095601	Golden flower (diploid) 1	5.027
	CNS0095602	Golden flower (diploid) 2	6.513
	CNS0095603	Golden flower (diploid) 3	5.401
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.678
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.784
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.464
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.618
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.403
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.513
	CNS0095610	Silvery flower (tetraploid) 1	5.669
	CNS0095611	Silvery flower (tetraploid) 2	7.078
	CNS0095612	Silvery flower (tetraploid) 3	11.343
	CNS0095613	Golden flower (tetraploid) 1	2.466
	CNS0095614	Golden flower (tetraploid) 2	3.121
	CNS0095615	Golden flower (tetraploid) 3	0.849
CRA001975	CRR073297	Stem 1	24.342
	CRR073298	Stem 2	20.014
	CRR073299	Stem 3	18.598
	CRR073300	Leaf 1	22.604
	CRR073301	Leaf 2	28.202
	CRR073302	Leaf 3	16.109
	CRR073303	Juvenile bud 1	28.356
	CRR073304	Juvenile bud 2	17.714
	CRR073305	Juvenile bud 3	37.492
	CRR073306	Third green 1	18.120
	CRR073307	Third green 2	17.285
	CRR073308	Third green 3	17.364
	CRR073309	Second white 1	4.491
	CRR073310	Second white 2	3.073
	CRR073311	Second white 3	1.471
	CRR073312	Silver flowering 1	0.874
	CRR073313	Silver flowering 2	1.048
	CRR073314	Silver flowering 3	3.250
	CRR073315	Gold flowering 1	3.060
	CRR073316	Gold flowering 2	3.288
	CRR073317	Gold flowering 3	2.695
	CRR073318	Tawny withering 1	8.227
	CRR073319	Tawny withering 2	6.658
	CRR073320	Tawny withering 3	10.954