Detail information of GWHGAAZE015120


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDP26015.11.6231E-179hypothetical protein JCGZ_21048 [Jatropha curcas]
trEMBLtr|A0A067K178|A0A067K178_JATCU6E-180Uncharacterized protein {ECO:0000313|EMBL:KDP26015.1}
TAIR10AT5G37370.14E-103PRP38 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene2549822125502171-
GWHAAZE00000004mRNA2549822125502171-
GWHAAZE00000004exon2549822125498997-
GWHAAZE00000004exon2549910225499173-
GWHAAZE00000004exon2550010325500183-
GWHAAZE00000004exon2550189025502171-
GWHAAZE00000004CDS2550189025502171-
GWHAAZE00000004CDS2550010325500183-
GWHAAZE00000004CDS2549910225499173-
GWHAAZE00000004CDS2549822125498997-
Transcript Sequence

Network for GWHGAAZE015120

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03371.16PRP38101591.30E-48
PF12871.8PRP38_assoc1812721.50E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12850PRPF38B Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf14.657
SRR3591706second leaf15.192
SRR3591707mature leaf16.716
SRR3591708Shoot apex26.015
SRR3591709Stem19.774
SRR3591710White floral bud19.641
SRR3591711White flower30.139
SRR3591712Green floral bud17.856
SRR3591713Yellow flower26.949
SRP173429 SRR8316895Juvenile bud stage 14.760
SRR8316896Juvenile bud stage 20.250
SRR8316897Juvenile bud stage 9.491
SRR8316894Third green stage 7.207
SRR8316900Third green stage 18.397
SRR8316901Third green stage 20.465
SRR8316898Complete white stage 6.763
SRR8316899Complete white stage 26.247
SRR8316903Complete white stage 12.037
SRR8316902Silver flowering stage10.447
SRR8316904Silver flowering stage10.895
SRR8316905Silver flowering stage6.462
SRR8316906Gold flowering stage 19.197
SRR8316907Gold flowering stage 20.032
SRR8316908Gold flowering stage 23.550
SRP132670SRR6706286Control22.112
SRR6706287Light intensity 50%19.815
SRR6706288Light intensity 20%20.376
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.365
CNS0095593Slightly white alabastrum(diploid) 220.388
CNS0095594Slightly white alabastrum(diploid) 316.299
CNS0095595Whole white alabastrum(diploid) 213.232
CNS0095596Whole white alabastrum(diploid) 311.135
CNS0095597Whole white alabastrum(diploid) 410.967
CNS0095598Silvery flower (diploied) 121.189
CNS0095599Silvery flower (diploied) 214.009
CNS0095600Silvery flower (diploied) 316.684
CNS0095601Golden flower (diploid) 117.654
CNS0095602Golden flower (diploid) 215.849
CNS0095603Golden flower (diploid) 315.014
CNS0095604Slightly white alabastrum(tetraploid) 116.124
CNS0095605Slightly white alabastrum(tetraploid) 215.328
CNS0095606Slightly white alabastrum(tetraploid) 327.417
CNS0095607Whole white alabastrum(tetraploid) 111.011
CNS0095608Whole white alabastrum(tetraploid) 28.170
CNS0095609Whole white alabastrum(tetraploid) 314.436
CNS0095610Silvery flower (tetraploid) 118.198
CNS0095611Silvery flower (tetraploid) 218.621
CNS0095612Silvery flower (tetraploid) 314.928
CNS0095613Golden flower (tetraploid) 112.994
CNS0095614Golden flower (tetraploid) 218.859
CNS0095615Golden flower (tetraploid) 314.994
CRA001975CRR073297Stem 118.652
CRR073298Stem 216.354
CRR073299Stem 39.040
CRR073300Leaf 115.567
CRR073301Leaf 216.477
CRR073302Leaf 37.089
CRR073303Juvenile bud 18.191
CRR073304Juvenile bud 24.344
CRR073305Juvenile bud 37.366
CRR073306Third green 11.732
CRR073307Third green 22.948
CRR073308Third green 34.544
CRR073309Second white 14.741
CRR073310Second white 24.934
CRR073311Second white 33.809
CRR073312Silver flowering 14.575
CRR073313Silver flowering 26.063
CRR073314Silver flowering 34.742
CRR073315Gold flowering 13.934
CRR073316Gold flowering 210.432
CRR073317Gold flowering 33.880
CRR073318Tawny withering 110.767
CRR073319Tawny withering 215.762
CRR073320Tawny withering 38.660