Gene detail

Detail information of GWHGAAZE015111

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002267976.2	1.7502E-145	PREDICTED: protein REVEILLE 1 [Vitis vinifera]
Swissprot	tr\|F4KGY6\|RVE1_ARATH	3E-72	Protein REVEILLE 1
trEMBL	tr\|A5C7G8\|A5C7G8_VITVI	3E-145	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN68733.1}
TAIR10	AT5G17300.1	2E-58	Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	25296861	25298959	+
GWHAAZE00000004	mRNA	25296861	25298959	+
GWHAAZE00000004	exon	25296861	25296971	+
GWHAAZE00000004	exon	25297088	25297199	+
GWHAAZE00000004	exon	25297283	25297344	+
GWHAAZE00000004	exon	25297505	25297906	+
GWHAAZE00000004	exon	25298237	25298959	+
GWHAAZE00000004	CDS	25296861	25296971	+
GWHAAZE00000004	CDS	25297088	25297199	+
GWHAAZE00000004	CDS	25297283	25297344	+
GWHAAZE00000004	CDS	25297505	25297906	+
GWHAAZE00000004	CDS	25298237	25298959	+

Transcript Sequence
>GWHTAAZE015127 GATCAAAGTGGATCAAAAGGCAACCATATTGCATTGGATATGGGCCCACGTTCTGTTAGTAGTGTTCAGCTAAAGGATCAGTTTGCTGGTGGGGATGACTATGCTCCAAAGGTGAGAAAACCGTACACGATAACAAAACAGAGGGAGAGGTGGACAGAAGAAGAGCACAAGAAATTTCTTGAAGCTTTAAAATTGTATGGTCGTGCTTGGCGACGTATAGAAGAGCATGTGGGCACCAAAACCGCAGTTCAGATTAGAAGTCATGCCCAAAAATATTTTTCTAAGGTGGTTCGTGAATCGAATAGCACTGATGCAAATTTGGTTAAACCTATTGAGATCCCCCCTCCTCGTCCTAAAAGAAAGCCAATGCACCCATATCCTCGTAAAGTGGCGTCTCCACTAAAAAATGGAAACCCTCTTGCCGAGCAACCAAGACGGTCCATGTCACCAAATTTGTCAGTTTCTGAAAAAGAAAACCAATCTCCAACTTCAGTGTTGTCAGGAATTGGTTCTGATGCGTTAGGTACAACAGATTCAAGCACACCAAACCGTAGCCCTTCACCAGTTTCATCTACTGCTGGTGCCAAACGAAGCGACTTATCAACCGAACCCAATCTGCTGGAAGAAAATGGATCATTACCTGATCAAGAAAATGCTAGTTCAAACCCCAACAAGCAAGTCCCCATGAAATTGGAGTTGTGCCCTCAGGACAAGGATTTTGTCAAAGAAGAATTGGCTGAGGCAGGACCCCCGCATAGTTTGAAGCTCTTTGGGAAAACAGTATTAGTTACTGATTCCAACAGACAATCTTCTCCGTTGTCAACATGCAAATTACAGCGTACAGACTCAAATTGTGAAAGACTACCTAAAAAACCGCCATCGGGTACAATGCCTACAAAACTTTCACCTGCAAATACAGAATGTGGTTGGAATACGTTACCTTGTGGACCAACACCACTTTATTACACTCAAATTCCGAACAAGAACTCAGATTCATGGTGGACCCTCTGTGGAGGTGTGCCATATCCTTTACTTCAACTGCACAATGCGGTTCCAGCTAAATCGAATGCGTTTTTTGAAAATGCAGCTCAAGATAAAGAGCTTCTTCAAAAGGAAGGGTCATGGACTGGTTCGAACACTGGTTTGGTAAATGCTGGGGTAGATGCTGATAGGGGCTGGGATTTTGAGACACAGAGCCATAGGCTTTTTTACAAGGAGGAAAATGAGCAAAAACCGAAATTTCTGTTCAAACCGAGTAAGGAAACTATGTGCCGTGGGCAAAAGGCTAACTTGGATAAGTTTGTGAAGGGGTTTGTTCCATATAAGAGATGTTTAGCAGATAGGGACATTCATTCATCCGCAATAACCGGTGAAGAGAGGGAAGAACAAAGAATTCGTCTTTGCTTGTAG

Network for GWHGAAZE015111

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	48	92	5.30E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	55.956
	SRR3591706	second leaf	22.602
	SRR3591707	mature leaf	22.519
	SRR3591708	Shoot apex	37.661
	SRR3591709	Stem	42.086
	SRR3591710	White floral bud	66.000
	SRR3591711	White flower	53.213
	SRR3591712	Green floral bud	33.004
	SRR3591713	Yellow flower	12.571
SRP173429	SRR8316895	Juvenile bud stage	18.337
	SRR8316896	Juvenile bud stage	21.542
	SRR8316897	Juvenile bud stage	17.629
	SRR8316894	Third green stage	8.585
	SRR8316900	Third green stage	22.896
	SRR8316901	Third green stage	23.809
	SRR8316898	Complete white stage	15.493
	SRR8316899	Complete white stage	41.832
	SRR8316903	Complete white stage	31.119
	SRR8316902	Silver flowering stage	9.697
	SRR8316904	Silver flowering stage	11.352
	SRR8316905	Silver flowering stage	5.419
	SRR8316906	Gold flowering stage	5.160
	SRR8316907	Gold flowering stage	8.638
	SRR8316908	Gold flowering stage	8.771
SRP132670	SRR6706286	Control	22.756
	SRR6706287	Light intensity 50%	26.207
	SRR6706288	Light intensity 20%	25.106
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.722
	CNS0095593	Slightly white alabastrum(diploid) 2	17.648
	CNS0095594	Slightly white alabastrum(diploid) 3	14.605
	CNS0095595	Whole white alabastrum(diploid) 2	17.967
	CNS0095596	Whole white alabastrum(diploid) 3	17.738
	CNS0095597	Whole white alabastrum(diploid) 4	15.277
	CNS0095598	Silvery flower (diploied) 1	12.660
	CNS0095599	Silvery flower (diploied) 2	32.188
	CNS0095600	Silvery flower (diploied) 3	17.813
	CNS0095601	Golden flower (diploid) 1	34.245
	CNS0095602	Golden flower (diploid) 2	21.796
	CNS0095603	Golden flower (diploid) 3	19.399
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.346
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.158
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.356
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.205
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.134
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.949
	CNS0095610	Silvery flower (tetraploid) 1	11.229
	CNS0095611	Silvery flower (tetraploid) 2	8.389
	CNS0095612	Silvery flower (tetraploid) 3	27.355
	CNS0095613	Golden flower (tetraploid) 1	1.949
	CNS0095614	Golden flower (tetraploid) 2	4.156
	CNS0095615	Golden flower (tetraploid) 3	2.011
CRA001975	CRR073297	Stem 1	81.695
	CRR073298	Stem 2	87.593
	CRR073299	Stem 3	68.102
	CRR073300	Leaf 1	117.801
	CRR073301	Leaf 2	122.479
	CRR073302	Leaf 3	82.190
	CRR073303	Juvenile bud 1	105.198
	CRR073304	Juvenile bud 2	99.094
	CRR073305	Juvenile bud 3	153.833
	CRR073306	Third green 1	260.074
	CRR073307	Third green 2	202.634
	CRR073308	Third green 3	257.395
	CRR073309	Second white 1	329.232
	CRR073310	Second white 2	265.068
	CRR073311	Second white 3	340.475
	CRR073312	Silver flowering 1	341.489
	CRR073313	Silver flowering 2	327.870
	CRR073314	Silver flowering 3	210.400
	CRR073315	Gold flowering 1	49.979
	CRR073316	Gold flowering 2	75.098
	CRR073317	Gold flowering 3	52.497
	CRR073318	Tawny withering 1	33.226
	CRR073319	Tawny withering 2	46.352
	CRR073320	Tawny withering 3	30.355