Gene detail

Detail information of GWHGAAZE015089

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP01718.1	4.4162E-171	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q0H8D7\|NBS1_ARATH	8E-107	Nijmegen breakage syndrome 1 protein {ECO:0000303\|PubMed:17182003}
trEMBL	tr\|A0A068U2A9\|A0A068U2A9_COFCA	2E-171	Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313\|EMBL:CDP01718.1}
TAIR10	AT3G02680.1	2E-86	nijmegen breakage syndrome 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	24941025	24946696	+
GWHAAZE00000004	mRNA	24941025	24946696	+
GWHAAZE00000004	exon	24941025	24941221	+
GWHAAZE00000004	exon	24941368	24941456	+
GWHAAZE00000004	exon	24942050	24942180	+
GWHAAZE00000004	exon	24942400	24942446	+
GWHAAZE00000004	exon	24942550	24942658	+
GWHAAZE00000004	exon	24943027	24943113	+
GWHAAZE00000004	exon	24943308	24943470	+
GWHAAZE00000004	exon	24944209	24944285	+
GWHAAZE00000004	exon	24944383	24944658	+
GWHAAZE00000004	exon	24945289	24945350	+
GWHAAZE00000004	exon	24945441	24945546	+
GWHAAZE00000004	exon	24946266	24946696	+
GWHAAZE00000004	CDS	24941025	24941221	+
GWHAAZE00000004	CDS	24941368	24941456	+
GWHAAZE00000004	CDS	24942050	24942180	+
GWHAAZE00000004	CDS	24942400	24942446	+
GWHAAZE00000004	CDS	24942550	24942658	+
GWHAAZE00000004	CDS	24943027	24943113	+
GWHAAZE00000004	CDS	24943308	24943470	+
GWHAAZE00000004	CDS	24944209	24944285	+
GWHAAZE00000004	CDS	24944383	24944658	+
GWHAAZE00000004	CDS	24945289	24945350	+
GWHAAZE00000004	CDS	24945441	24945546	+
GWHAAZE00000004	CDS	24946266	24946382	+
GWHAAZE00000004	three_prime_UTR	24946383	24946696	+

Transcript Sequence
>GWHTAAZE015105 ATGATATCCTTGGATAATCTGCAGAAGAAATCTTCGAATATATCATCCAAAGTTCAGATAAGAGATTGCTCGAAGTATGGGACATTTATAAACAAGAACCTAGGCTCAAAGGAAAAAGTTCATGAATTTCCAAATAGAGAAACAACTCTGAAAGATGGGGATATGGTTTCATTTGGGACTGGTAATGCTACTTACAGGTTTTCTTTTGTTCCCATCATTTTTCTTAATTTATGTTCAGAGCCTGTCCAAGCAAATCAAGTTCTAAAATCCAGTATATTATCAATAGGTGCTACTATTACTCGTAATTGGAGTCCAGATTGCACGCATGTGCTCGTTGATGATTTCATGCTGGTGAAAGAACATGCATTTGATGCAATTGTGGCTAAAAAACCTTTAATCCTTCAAAACTGGGTTGAGTTCATTGCTGAAAAGGGTGTTTGCACGGACATTCCAAGCTGCAATTCTTATGCTCCAACCTTGAAGTTCGAAGGATTGTCGGTCAAAGTTGCAGATCCTAGGTCTCAAGAATGCTGTTTGAGAGGTTACACTTTCCTGTTGGAATCAACTCACAAGTATAAATTAAGGGACAGGTTGCAGTCATTATTGGAAGTGGCTGGGGCTAAGGTTGCTCCTGTTGAAGGATTCTATCCAACCAGCCAAGGTACGGAGCATGAGGGAAGTGACCGTGTGGTGCATGTAATCCCTGGAGGATCTGCAGATAGCTCACAGTCCGTCCGTCAATTATGTAGAGTCAATGAGATAAATTTGATTTGTGCTACTTTATCTGGACATCTGGATCCATCTATCATAGTATCACCACCCGTTGTTGTCTCATCTTCATGCTCCACAGACGAGACGGTGGTAGCAGATTCTGATGTGGAAATGGAAACCGCCACATCAGCAGGGGAAATGCCTTTTCACACCATAGAATCTCTTGAATATCAAAGAAAAAGGGATATATCATCTGATTGTGCTGTTGATAAATCAAAAAGTGATCATGTTCTAAGGGACGGAAGTGAGAGTATGATTGGAAGGGTACATAAAGTTGAGGATTCTGAAAGTGAAAATGTTGATATTATTTTTAGCCAAGATTTGATTGTGAGAGATACATATGTACCAGCTTCGGTCAATTCATCGATAAACGGTGCAGTTATAAACTTCAAACGCTTTAGAAAGATGGGAACTGAATCAGGAAATAGCTTTGAGAATCTTATTCCATTTTCGAAAGATCCATACAGAGATGGTGACTATGAGAATGATGAGAAAGTAGCGGAGTCGATAAAAGAAGAGAAAAGGCGAAAACAAATGGAGGCTGTTGCTGAGGATTTGTTCAACAATGAGAAGGTCAGTAGCTACGTTAGAGCTCCCGTCATAGCTGGAACGACAAATACTAGTTTTCAAGGGGCATTTCGCTGCACAGCTTTAACTTATGTAAATTTTTTGAATTTTTCCTTCATGTAAAATCTTTGTTTTTAGTCGTAATTAAAACCTTAACATGGTAAGCCTTCAGGACAAACGAAAAATTCATTTCTAGCAGTAGTTAAGTGTGTGTAGTGTGAATGTGAAAAAAGTGGGCAGTTCCCCTCAAACTTAATTTCTCTGTTTCTGTGAGCCAGCACGGAAAATCATACCGGCTGATGTGGCCACTCAGGATATGGAGCTCTCTTCTTTTAGTGGAACAAAACCTTACCAAACTAGAATTATGGTACCGAAGTCCTGATATTTTATATACTGTTCACATTAAACCTACCACTTTTTTCAATTTATGTTTTTAC

Network for GWHGAAZE015089

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00498.27	FHA	15	59	0.00037

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10867	NBN, NBS1	Homologous recombination	map03440
K10867	NBN, NBS1	Cellular senescence	map04218

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.513
	SRR3591706	second leaf	6.613
	SRR3591707	mature leaf	7.785
	SRR3591708	Shoot apex	14.811
	SRR3591709	Stem	18.506
	SRR3591710	White floral bud	11.471
	SRR3591711	White flower	10.535
	SRR3591712	Green floral bud	9.807
	SRR3591713	Yellow flower	7.278
SRP173429	SRR8316895	Juvenile bud stage	8.481
	SRR8316896	Juvenile bud stage	11.010
	SRR8316897	Juvenile bud stage	4.876
	SRR8316894	Third green stage	4.403
	SRR8316900	Third green stage	11.907
	SRR8316901	Third green stage	10.709
	SRR8316898	Complete white stage	4.758
	SRR8316899	Complete white stage	19.613
	SRR8316903	Complete white stage	7.256
	SRR8316902	Silver flowering stage	4.199
	SRR8316904	Silver flowering stage	7.283
	SRR8316905	Silver flowering stage	2.816
	SRR8316906	Gold flowering stage	10.268
	SRR8316907	Gold flowering stage	8.765
	SRR8316908	Gold flowering stage	8.213
SRP132670	SRR6706286	Control	7.063
	SRR6706287	Light intensity 50%	7.117
	SRR6706288	Light intensity 20%	7.594
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.273
	CNS0095593	Slightly white alabastrum(diploid) 2	10.378
	CNS0095594	Slightly white alabastrum(diploid) 3	10.799
	CNS0095595	Whole white alabastrum(diploid) 2	10.969
	CNS0095596	Whole white alabastrum(diploid) 3	8.475
	CNS0095597	Whole white alabastrum(diploid) 4	10.061
	CNS0095598	Silvery flower (diploied) 1	18.079
	CNS0095599	Silvery flower (diploied) 2	14.165
	CNS0095600	Silvery flower (diploied) 3	12.396
	CNS0095601	Golden flower (diploid) 1	18.481
	CNS0095602	Golden flower (diploid) 2	12.677
	CNS0095603	Golden flower (diploid) 3	12.943
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.155
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.814
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.594
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.866
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.208
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.370
	CNS0095610	Silvery flower (tetraploid) 1	12.789
	CNS0095611	Silvery flower (tetraploid) 2	13.461
	CNS0095612	Silvery flower (tetraploid) 3	8.515
	CNS0095613	Golden flower (tetraploid) 1	7.791
	CNS0095614	Golden flower (tetraploid) 2	11.196
	CNS0095615	Golden flower (tetraploid) 3	6.473
CRA001975	CRR073297	Stem 1	9.930
	CRR073298	Stem 2	9.180
	CRR073299	Stem 3	8.167
	CRR073300	Leaf 1	10.049
	CRR073301	Leaf 2	11.123
	CRR073302	Leaf 3	9.018
	CRR073303	Juvenile bud 1	7.821
	CRR073304	Juvenile bud 2	6.278
	CRR073305	Juvenile bud 3	7.296
	CRR073306	Third green 1	1.081
	CRR073307	Third green 2	1.340
	CRR073308	Third green 3	1.632
	CRR073309	Second white 1	0.953
	CRR073310	Second white 2	3.275
	CRR073311	Second white 3	1.586
	CRR073312	Silver flowering 1	1.327
	CRR073313	Silver flowering 2	0.462
	CRR073314	Silver flowering 3	0.524
	CRR073315	Gold flowering 1	4.787
	CRR073316	Gold flowering 2	7.123
	CRR073317	Gold flowering 3	3.705
	CRR073318	Tawny withering 1	15.155
	CRR073319	Tawny withering 2	7.803
	CRR073320	Tawny withering 3	13.226