Gene detail

Detail information of GWHGAAZE015076

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004233277.1	0	PREDICTED: probable L-type lectin-domain containing receptor kinase S.5 [Solanum lycopersicum]
Swissprot	tr\|Q9FG33\|LRKS5_ARATH	4E-144	Probable L-type lectin-domain containing receptor kinase S.5 (Precursor)
trEMBL	tr\|K4B7G2\|K4B7G2_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc02g068300.2.1}
TAIR10	AT5G06740.1	3E-119	Concanavalin A-like lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	24617378	24620978	+
GWHAAZE00000004	mRNA	24617378	24620978	+
GWHAAZE00000004	exon	24617378	24618632	+
GWHAAZE00000004	exon	24620146	24620978	+
GWHAAZE00000004	CDS	24617378	24618632	+
GWHAAZE00000004	CDS	24620146	24620978	+

Transcript Sequence
>GWHTAAZE015090 ATGGGAGTATTAACCACCATCGTCACCACCGTCACCCTCCTACTCTTATACGCCGCCATTTTAACCTCCTCACAAAAGCTTAAAAACTTCACCGACCAATACGGAGGACCCTTCAACGACACCGTTTACTACCGCTCAATCTTCGAGGTCGAATCTCCGGCCACCATCAGCAACGACGCCCTTCAGGTCACCCCGGACACCCTCGGAGACTCCTCCATCTTCAGCCTCAACAACCGCTCCGGCAGAATCCTCCTCCGCCGGCCTTTCAAACTCTTCAATCCAAAATCCCCCAACACCACCAGAATCTCCTCCTTCACCTCCTCCTTCCTCATCAACATCTACCGGCCGAAAAACGAAACCGCCGGCGAAGGCCTCGCCTTCGTCATCGCTCCCAATCTGGACCTTCCGGCGAACAGCTCCGGTGAGTATTTAGGTTTGTCAAACCCAAGCACCGACGGAAACTCCAGCAATAAGTTTGTTGCGGTTGAGTTCGATACTTATAAGCAGGAGTTCGATCCGGATGATAATCATATAGGACTTGATGTTAATAGTGTTAGATCTATCGAAACCGAATCGTTGTTAGCTCATGGAATTCAGCTTGCGCCTTTAGGAGCTAAACTGTATAATGTGTGGATTATATATGATGGTGTTAATAAAACCCTAGAGGTTTATATGGTTGAGCAAACCAATAAGGATGATCCTACACCTGCAAAACCAACAACACCATTGCTAAAATCAAATCTCGATCTAAGAGATGTTGTTGACGAGAATTCGTATTTCGGATTCTCAGCTTCCACTGGAAATCAGATTCAGTTGAATTGTGTTTTGAGGTGGAATTTGACGGTGGAGTATTTTGCAAGCAAGGAGGGACCGTCGTTGAAGATTGTGCTTGGAGCTGCGGTCCCAGCGGGGGTGCTGGTAGTGATGGGGGTGGCAGCGTTGGCTTGTTTTCTCCACAGGAGGAAGACGAGGGCGGGGTTGGGTTCGAACATATTGGGTGCTTTGAAGAGTTTGCCTGGAATGCCAAGGGAGTTTCAATACAAGGAATTGAAGAAGGCGACTAATAATTTTGACGAGAAGTATAAGTTGGGACAAGGTGGGTATGGTGTTGTTTACAGGGGAATTATGCACAGTGAGAATTTGGATTTGGCGGTTAAGTGTTTCTCGAGGGAGAATATAAAGGGTGAAGATGATTTCTTGGCTGAACTCACCATTATCAACCGGCTTCGGCACAAACACCTTGTCCGATTGTTAGGATGGTGCAACAAGAATGGTAAGCTACTGCTAGTATACGAATACATGCCGAATGGCAGCCTCGACAAGCACCTTTTTCACGGAGCGAACACTGAGACGCTGAGCTGGATCCTCCGGTACAAGATAATATCTGGTGTAGCTTCGGCCCTTCACTACCTCCACAACGAGTATGACCAGAAGGTGGTGCACCGCGACCTCAAGGCTAGCAACATCATGCTCGACTCCAACTTCAATGCCCGGCTCGGTGACTTTGGCCTCGCACGGGCCCTTGACAACGAGAAAACCTCGTACGCCGAGGCCGATGGCGTACTGGGTACTATAGGGTACATCGCGCCGGAATGTTTCCACACCGGCAAAGCCACCCAACACTCCGACGTATATGCATTTGGCGCGGTTTTGTTGGAAGTGGTTTGTGGACAGCGGCCTGGGGCTCGGATCGGCGGGTTCCACGTATTGGTCGACTGGGTTTGGTCCTTGTACCGGGAAGGGCAGATTCTTAGAGCCGTTGATGAGAGGCTTGGGGAGGATTTTGCGGAGGAGGAAGCCAAGAGGATCTTGATGTTAGGGTTGGCGTGTTCACACCCTATTGCGAACAAGAGGCCGAAAACGCAGGCAATTGTGCAGATAATAGAGGGGTTGGTTGAGGTGCCAGAGGTACCGCATTTTAAGCCATCGTTTGTGTGGCCGGCTATGGGGCCGATGGGTGATATTAGTGATGCATTTACAGCTGATACAACTTCAATTACTACATCCCAGTTTGGTTCCGAGTACAGTCCCCAATTTCTCAGCAGAGAGGGATACATGGGGTACAGTGACCAACATTCTTTAGTGTAG

Network for GWHGAAZE015076

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00139.20	Lectin_legB	49	287	6.40E-60
PF07714.18	PK_Tyr_Ser-Thr	361	627	7.20E-48

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_L-LEC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity
GO:0030246	molecular_function	carbohydrate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.660
	SRR3591706	second leaf	1.669
	SRR3591707	mature leaf	2.664
	SRR3591708	Shoot apex	3.323
	SRR3591709	Stem	6.182
	SRR3591710	White floral bud	17.796
	SRR3591711	White flower	15.137
	SRR3591712	Green floral bud	13.644
	SRR3591713	Yellow flower	6.280
SRP173429	SRR8316895	Juvenile bud stage	27.806
	SRR8316896	Juvenile bud stage	14.196
	SRR8316897	Juvenile bud stage	23.751
	SRR8316894	Third green stage	3.913
	SRR8316900	Third green stage	11.295
	SRR8316901	Third green stage	13.368
	SRR8316898	Complete white stage	3.456
	SRR8316899	Complete white stage	26.662
	SRR8316903	Complete white stage	4.899
	SRR8316902	Silver flowering stage	2.712
	SRR8316904	Silver flowering stage	2.981
	SRR8316905	Silver flowering stage	1.474
	SRR8316906	Gold flowering stage	8.252
	SRR8316907	Gold flowering stage	7.723
	SRR8316908	Gold flowering stage	17.272
SRP132670	SRR6706286	Control	11.825
	SRR6706287	Light intensity 50%	14.010
	SRR6706288	Light intensity 20%	13.185
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.521
	CNS0095593	Slightly white alabastrum(diploid) 2	21.291
	CNS0095594	Slightly white alabastrum(diploid) 3	16.793
	CNS0095595	Whole white alabastrum(diploid) 2	10.517
	CNS0095596	Whole white alabastrum(diploid) 3	5.474
	CNS0095597	Whole white alabastrum(diploid) 4	8.657
	CNS0095598	Silvery flower (diploied) 1	21.672
	CNS0095599	Silvery flower (diploied) 2	29.361
	CNS0095600	Silvery flower (diploied) 3	18.694
	CNS0095601	Golden flower (diploid) 1	36.476
	CNS0095602	Golden flower (diploid) 2	22.161
	CNS0095603	Golden flower (diploid) 3	21.817
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.558
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.765
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.224
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.505
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.365
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.163
	CNS0095610	Silvery flower (tetraploid) 1	3.291
	CNS0095611	Silvery flower (tetraploid) 2	2.827
	CNS0095612	Silvery flower (tetraploid) 3	3.238
	CNS0095613	Golden flower (tetraploid) 1	3.035
	CNS0095614	Golden flower (tetraploid) 2	2.967
	CNS0095615	Golden flower (tetraploid) 3	1.283
CRA001975	CRR073297	Stem 1	14.327
	CRR073298	Stem 2	10.534
	CRR073299	Stem 3	9.677
	CRR073300	Leaf 1	14.004
	CRR073301	Leaf 2	18.307
	CRR073302	Leaf 3	11.693
	CRR073303	Juvenile bud 1	14.392
	CRR073304	Juvenile bud 2	14.342
	CRR073305	Juvenile bud 3	24.214
	CRR073306	Third green 1	5.392
	CRR073307	Third green 2	4.749
	CRR073308	Third green 3	5.812
	CRR073309	Second white 1	4.452
	CRR073310	Second white 2	3.212
	CRR073311	Second white 3	3.169
	CRR073312	Silver flowering 1	9.204
	CRR073313	Silver flowering 2	9.440
	CRR073314	Silver flowering 3	8.061
	CRR073315	Gold flowering 1	5.651
	CRR073316	Gold flowering 2	11.528
	CRR073317	Gold flowering 3	17.373
	CRR073318	Tawny withering 1	17.749
	CRR073319	Tawny withering 2	40.403
	CRR073320	Tawny withering 3	18.152