Gene detail

Detail information of GWHGAAZE015064

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO81019.1	1.25375E-88	hypothetical protein CISIN_1g0097281mg, partial [Citrus sinensis]
Swissprot	tr\|P21357\|AROF_SOLTU	1E-86	Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic (Precursor)
trEMBL	tr\|A0A067GMZ6\|A0A067GMZ6_CITSI	5E-89	Uncharacterized protein {ECO:0000313\|EMBL:KDO81019.1} (Fragment)
TAIR10	AT1G22410.1	1E-71	Class-II DAHP synthetase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	24140126	24147713	+
GWHAAZE00000004	mRNA	24140126	24147713	+
GWHAAZE00000004	exon	24140126	24140670	+
GWHAAZE00000004	exon	24145168	24145447	+
GWHAAZE00000004	exon	24145553	24145801	+
GWHAAZE00000004	exon	24147618	24147713	+
GWHAAZE00000004	CDS	24140126	24140670	+
GWHAAZE00000004	CDS	24145168	24145447	+
GWHAAZE00000004	CDS	24145553	24145801	+
GWHAAZE00000004	CDS	24147618	24147713	+

Transcript Sequence
>GWHTAAZE015078 ATGGCTGCTATGGCCATCACAAGCGGTGTCAACTATCTTCTCCCTCCCAAATCCTTTCAAACTCGCCGATTTTCTTTTCCTCTATCTGCAAAACCACCTAATTCAATCAGATTCATTCGACGCATCTCAGTCAATAATAGATCTGCCGCTCAACCAAACAAGAACCCCACAATTGTCGTCTCTTCTGATGACGATAACCAGCGACGGCCACGGAAGAAGCGTACCTCGTCGGCGACGGAGTGGGTGGTGGACAGCTGGAAAACGAAAGATGCATACGATAAACTGCCTCCTTACCCGAAAGAGGAGGAGTTGAAGTCGGTGCTTGAAACGCTCCAAGGGTCCCCTCCTCTTGTGTTTGAGTGGGAGGCGAGGAAATTGGAGGAGCGCCTCGCGGAGGCTGCAAGGGGCAAGGCCTTTTTGTTGCAAGGCGGATATTGTGCGGAGAGTTTCAACGAGTTCAATGCTGAAAATATTAGGGGACTTTTACGCTTCTACTCCAGATGGCCTCTGTCATCATGTTTGTTGGACAGGTGCCGGTCATCAAGGTACCGTGAACTTGCTACTAGAATGGATGAGGCCCTTGGGTTTTTGTCTGCGGCTGGAGTTACAATGGACAATCATCCTATAATGACAACCATCGATTTTTGGACTTCCCATGAGTGTTTGCATTTGCCCTACGAGCAATCTCTCACTAGGATAGATTACCCTTCTGGCTTGTGCTATGACTGCTCAGCCCATATGCTTTGGGTTGGAGAACGAACTCGCCAACTCGATGGTGCTCATGTCGAGTTCCTTAGAGGAATTGCTAATCCACTTGGAATTAAGGTGGGTCATATGATTGATTCTAAAGAACTAGTGAAGCTGATCAAGATTTTGAACCCTCAAAATAAGCCGGGGAGGATTACATTAATAACAAGAATGGGTGAAGGACCCATACAGAGTGGTCTTCGCCCTCTAATTAGGGCAGTTAAAAGATCAGGCCTAATCGTCACTTGGGTTATTGATCCTATGCATGGTAACATGCTTAGAAATTTCTTTCTTGGTGACAAATTGGCCGTCTTCCAATCTATCAAGGAGGAAGTGAACACTTTCTTTGACATTCACGCGGAGGAAGCAAGCTACCCAGGGGAATTCATCTGGAGATTACGTGCGAAAACGTGTGGGAGATAA

Network for GWHGAAZE015064

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01474.17	DAHP_synth_2	81	163	1.20E-19
PF01474.17	DAHP_synth_2	178	376	1.30E-70

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01626	E2.5.1.54, aroF, aroG, aroH	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Phenylalanine, tyrosine and tryptophan biosynthesis	map00400
		Quorum sensing	map02024

Gene Ontology

GO term	Ontology	Name
GO:0009073	biological_process	aromatic amino acid family biosynthetic process
GO:0003824	molecular_function	catalytic activity
GO:0003849	molecular_function	3-deoxy-7-phosphoheptulonate synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	2.752
	SRR3591711	White flower	3.585
	SRR3591712	Green floral bud	4.203
	SRR3591713	Yellow flower	2.727
SRP173429	SRR8316895	Juvenile bud stage	0.300
	SRR8316896	Juvenile bud stage	0.830
	SRR8316897	Juvenile bud stage	0.809
	SRR8316894	Third green stage	0.275
	SRR8316900	Third green stage	2.275
	SRR8316901	Third green stage	2.265
	SRR8316898	Complete white stage	0.312
	SRR8316899	Complete white stage	0.519
	SRR8316903	Complete white stage	0.158
	SRR8316902	Silver flowering stage	0.335
	SRR8316904	Silver flowering stage	0.230
	SRR8316905	Silver flowering stage	0.170
	SRR8316906	Gold flowering stage	0.764
	SRR8316907	Gold flowering stage	0.796
	SRR8316908	Gold flowering stage	1.603
SRP132670	SRR6706286	Control	3.542
	SRR6706287	Light intensity 50%	3.372
	SRR6706288	Light intensity 20%	3.717
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.240
	CNS0095593	Slightly white alabastrum(diploid) 2	1.218
	CNS0095594	Slightly white alabastrum(diploid) 3	0.279
	CNS0095595	Whole white alabastrum(diploid) 2	0.945
	CNS0095596	Whole white alabastrum(diploid) 3	1.258
	CNS0095597	Whole white alabastrum(diploid) 4	0.504
	CNS0095598	Silvery flower (diploied) 1	0.096
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.186
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.246
	CNS0095603	Golden flower (diploid) 3	0.196
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.637
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.025
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.960
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.994
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.180
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.908
	CNS0095610	Silvery flower (tetraploid) 1	0.530
	CNS0095611	Silvery flower (tetraploid) 2	1.582
	CNS0095612	Silvery flower (tetraploid) 3	1.473
	CNS0095613	Golden flower (tetraploid) 1	0.177
	CNS0095614	Golden flower (tetraploid) 2	0.952
	CNS0095615	Golden flower (tetraploid) 3	0.149
CRA001975	CRR073297	Stem 1	2.713
	CRR073298	Stem 2	2.030
	CRR073299	Stem 3	1.982
	CRR073300	Leaf 1	3.290
	CRR073301	Leaf 2	4.277
	CRR073302	Leaf 3	3.275
	CRR073303	Juvenile bud 1	3.149
	CRR073304	Juvenile bud 2	2.417
	CRR073305	Juvenile bud 3	1.527
	CRR073306	Third green 1	1.092
	CRR073307	Third green 2	0.747
	CRR073308	Third green 3	0.848
	CRR073309	Second white 1	1.181
	CRR073310	Second white 2	0.830
	CRR073311	Second white 3	1.102
	CRR073312	Silver flowering 1	1.974
	CRR073313	Silver flowering 2	2.461
	CRR073314	Silver flowering 3	2.753
	CRR073315	Gold flowering 1	0.070
	CRR073316	Gold flowering 2	0.259
	CRR073317	Gold flowering 3	0.442
	CRR073318	Tawny withering 1	0.618
	CRR073319	Tawny withering 2	0.682
	CRR073320	Tawny withering 3	0.236