Detail information of GWHGAAZE015057


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP02819.19.08064E-36unnamed protein product [Coffea canephora]
trEMBLtr|A0A068U3S6|A0A068U3S6_COFCA3E-36Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313|EMBL:CDP02819.1}
TAIR10AT5G49530.12E-22SIN-like family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene2397744223978225-
GWHAAZE00000004mRNA2397744223978225-
GWHAAZE00000004exon2397799623978225-
GWHAAZE00000004exon2397779723977914-
GWHAAZE00000004exon2397744223977625-
GWHAAZE00000004CDS2397799623978225-
GWHAAZE00000004CDS2397779723977914-
GWHAAZE00000004CDS2397755423977625-
GWHAAZE00000004three_prime_UTR2397744223977553-
Transcript Sequence

Network for GWHGAAZE015057

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14721RPC5, POLR3E RNA polymerase map03020
Cytosolic DNA-sensing pathwaymap04623

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.149
SRR3591709Stem0.000
SRR3591710White floral bud2.664
SRR3591711White flower0.170
SRR3591712Green floral bud6.302
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 7.318
SRR8316896Juvenile bud stage 16.670
SRR8316897Juvenile bud stage 3.045
SRR8316894Third green stage 3.620
SRR8316900Third green stage 11.563
SRR8316901Third green stage 9.489
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.195
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control4.496
SRR6706287Light intensity 50%3.911
SRR6706288Light intensity 20%3.879
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.455
CNS0095593Slightly white alabastrum(diploid) 29.771
CNS0095594Slightly white alabastrum(diploid) 321.002
CNS0095595Whole white alabastrum(diploid) 215.359
CNS0095596Whole white alabastrum(diploid) 322.545
CNS0095597Whole white alabastrum(diploid) 422.782
CNS0095598Silvery flower (diploied) 10.087
CNS0095599Silvery flower (diploied) 20.433
CNS0095600Silvery flower (diploied) 30.000
CNS0095601Golden flower (diploid) 10.527
CNS0095602Golden flower (diploid) 20.261
CNS0095603Golden flower (diploid) 30.158
CNS0095604Slightly white alabastrum(tetraploid) 110.266
CNS0095605Slightly white alabastrum(tetraploid) 211.043
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 119.010
CNS0095608Whole white alabastrum(tetraploid) 228.901
CNS0095609Whole white alabastrum(tetraploid) 38.199
CNS0095610Silvery flower (tetraploid) 10.200
CNS0095611Silvery flower (tetraploid) 20.092
CNS0095612Silvery flower (tetraploid) 30.828
CNS0095613Golden flower (tetraploid) 10.124
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.443
CRA001975CRR073297Stem 12.047
CRR073298Stem 22.274
CRR073299Stem 32.222
CRR073300Leaf 11.814
CRR073301Leaf 21.551
CRR073302Leaf 31.298
CRR073303Juvenile bud 12.162
CRR073304Juvenile bud 21.684
CRR073305Juvenile bud 30.082
CRR073306Third green 10.303
CRR073307Third green 20.259
CRR073308Third green 30.517
CRR073309Second white 10.000
CRR073310Second white 20.296
CRR073311Second white 30.105
CRR073312Silver flowering 10.217
CRR073313Silver flowering 20.853
CRR073314Silver flowering 30.203
CRR073315Gold flowering 10.086
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.240
CRR073319Tawny withering 20.612
CRR073320Tawny withering 30.125