Gene detail

Detail information of GWHGAAZE015049

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002276939.1	0	PREDICTED: exosome complex exonuclease RRP44 [Vitis vinifera]
Swissprot	tr\|Q0WPN0\|DI32L_ARATH	4E-69	Inactive exonuclease DIS3L2
trEMBL	tr\|D7SWC0\|D7SWC0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI21569.3}
TAIR10	AT2G17510.1	0	ribonuclease II family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	23850802	23865808	+
GWHAAZE00000004	mRNA	23850802	23865808	+
GWHAAZE00000004	exon	23850802	23851123	+
GWHAAZE00000004	exon	23851805	23851942	+
GWHAAZE00000004	exon	23852033	23852190	+
GWHAAZE00000004	exon	23853116	23853171	+
GWHAAZE00000004	exon	23853449	23853571	+
GWHAAZE00000004	exon	23853785	23853915	+
GWHAAZE00000004	exon	23855936	23856176	+
GWHAAZE00000004	exon	23857438	23857594	+
GWHAAZE00000004	exon	23858392	23858632	+
GWHAAZE00000004	exon	23858808	23858964	+
GWHAAZE00000004	exon	23859113	23859181	+
GWHAAZE00000004	exon	23859987	23860112	+
GWHAAZE00000004	exon	23860265	23860317	+
GWHAAZE00000004	exon	23861446	23861552	+
GWHAAZE00000004	exon	23862340	23862394	+
GWHAAZE00000004	exon	23862517	23862616	+
GWHAAZE00000004	exon	23863541	23863662	+
GWHAAZE00000004	exon	23864238	23864297	+
GWHAAZE00000004	exon	23864394	23864499	+
GWHAAZE00000004	exon	23864576	23864671	+
GWHAAZE00000004	exon	23864946	23865027	+
GWHAAZE00000004	exon	23865122	23865187	+
GWHAAZE00000004	exon	23865610	23865808	+
GWHAAZE00000004	five_prime_UTR	23850802	23851069	+
GWHAAZE00000004	CDS	23851070	23851123	+
GWHAAZE00000004	CDS	23851805	23851942	+
GWHAAZE00000004	CDS	23852033	23852190	+
GWHAAZE00000004	CDS	23853116	23853171	+
GWHAAZE00000004	CDS	23853449	23853571	+
GWHAAZE00000004	CDS	23853785	23853915	+
GWHAAZE00000004	CDS	23855936	23856176	+
GWHAAZE00000004	CDS	23857438	23857594	+
GWHAAZE00000004	CDS	23858392	23858632	+
GWHAAZE00000004	CDS	23858808	23858964	+
GWHAAZE00000004	CDS	23859113	23859181	+
GWHAAZE00000004	CDS	23859987	23860112	+
GWHAAZE00000004	CDS	23860265	23860317	+
GWHAAZE00000004	CDS	23861446	23861552	+
GWHAAZE00000004	CDS	23862340	23862394	+
GWHAAZE00000004	CDS	23862517	23862616	+
GWHAAZE00000004	CDS	23863541	23863662	+
GWHAAZE00000004	CDS	23864238	23864297	+
GWHAAZE00000004	CDS	23864394	23864499	+
GWHAAZE00000004	CDS	23864576	23864671	+
GWHAAZE00000004	CDS	23864946	23865027	+
GWHAAZE00000004	CDS	23865122	23865187	+
GWHAAZE00000004	CDS	23865610	23865808	+

Transcript Sequence
>GWHTAAZE015063 GGAAAAGACAGTGATACGTGGCGTCCGCCATTAGAGCACTAAAAGCAAGGTCCAACTCATGCGAAACTAAAAGCTACAAAATCGAACCAAATACAGTAATACACACGTAAAACTCTCTAAGAATCTCCCACAGAGGAGTATCACAAGGCAACCTCGAATGATTAGAGCATAAACTATAACCAAAAATAGCTCCACAATCACACGCCGCCATTGAAGAAGGTTTTTTAAAACGCAAAGCTTTTTCCAGTAATCGAGTTGTGCGCAAAAAATGTTACAGAGCAAATCATTCGTCAGGAAAACAAGGCAAGGGAAAGTAGTCAAGGTTGTTCGAGAGCACTATCTTAGAGATGATATATACTGCGGAGCGTCGTTCTGTAAAGTCTGTGATACTAAAGATGCACGCCTGAGCTTGGGTGCTTCAACAATTCTGGTTGTTGACACGAATGTCGTTCTCAATCAGATTGATTTGCTCGAGAATCCGGCAATTGACGAAGTTGTGGTGCTATCGGTGGTGTTGGAAGAGGTCAAGAACAAGAATCTTGCTGTTTATAATAGACTTAGGGCCTTGTGCAGCAACTCTATGAGGAAGTTCTTCGTTTTCTCAAATGAGTACCACAAGGATACATATGTGAAAGCCATGACTGGGGAAAGTCCAAACGACCGGAATGACAGAGCTATTCGGGTAGCAGCTCAGTGGTATCAGAATCATCTTGGTGGTGCAATACGGGTCTTACTAATCACAAATGACCGGGAGAACAAGAGAAAAGCCAGCGAAGAGGGCATTTCTGCAGAGACAGTTGAATCTTATGTGAGATCACTTGGTCAAGTGGCATTGCTTGACCTAATTGTTCAACCTCCCTCTGAAGACACTCGAATGGAGGAAGTTGAAGATTTGAGGCCATCAAAGAGAAAAGTCATCTATACAGAGCATAAGCCTATGTCAGAGATTACTTCAGGATTGCTTCGTGGAATATACCATCAAGGGAAACTTCGTATTAACCGTTATAATCCATATGAAGCATATGTTGGAAGTGAGAGTATTGGTGATGAAATAATTATCTATGGGCGCGGAAATATGAATAGGGCTTTTGATGGTGATGTAGTGGCTGTGGAACTTTTACCTCAAGAACAATGGCATGAAGAGAAGTCCCTCTCTATTGCTCAAGAAGAGGATGAGGACGATGAAGATGTTCATTTAGCTCCAAGCAGTGCTGATGATGCTCCCCGAGTTACAAATCTAGTGAAAGGATCAAATGGAGATGTGAATAACGTGCCTTCTCGTCCATCTGGGCGTGTAGTTGGTATTATAAAGCGGAATTGGAAATCGTATTGTGGGTCTTTGGATCCAATGCCTATGCCGGCGGGCAATGGTGGTGTTGCCCACGCTTTATTTGTCTCAAAAGATAGGAGAATTCCGAAGATTCGGATTCAAACTAGACAGCTTGGGAATCTTCTCGACAAAAGAATTATTGTTGCGGTTGATTCTTGGGATTGTGCATCTCGATATCCATCCGGTCATTATGTAAGGACAATAGGAGAAATAGGTGACAGAGATACTGAAAGTGAGGTGGTGTTGATAGAGAATGACATAGATGCTAGGCCATTTTCTTCTCAAGTTTTGGCTTGCTTGCCACCGTTACCTTGGAACGTGTCTTCGGAAGATTTGGCAAATCCTATTAGACAGGACTTGCGTCATTTACGTGTCTTTAGTGTGGACCCACCGGGATGTAAGGATATTGATGACGCATTGCACTGTACTGCTTCTCCAAATGGGAACTTTGAAGTTGGAGTTCATATTGCTGATGTTACAAATTTTGTTCACCCTGGAACCCCCCTGGATGACGAGGCAACACAGAGGGGTACTTCTGTCTACCTTGTTGAACGCCGGATTGACATGCTTCCAAAACCTCTAACAGAAGATATATGTTCACTTCGAGCTGATGTGGAGAGACTTGCTTTCTCAGTTATTTGGGAAATGACACCTGAAGCTGAGATCATTTCTACAAGATACACAAAAAGTGTGATCAAGTCATGTGCAGCACTGTCATATGTTGAAGCTCAAGCAAGGATGGATGATAGCCGCTTAATGGATCCAGTAACTACAGATTTGCGAAATATGAATGCTTTAGCAAAGATAATGAGGCAAAGGCGTATTGAAAGAGGTGCCTTAACTCTTGCTTCTGCAGAAGTCAAATTTCAAATCGACACTGAAACTCACGACCCTCTTGATATTGGCGGCATCCTAGCCCAACCAAAGAGATGCTTGAACCTTTGCTTCGACACTGCTGTTGCTGTTGGCCTCAATCTCGACATGTCATCATCGAAAGCACTGGCTGATTCACTTGATCGTGCTGTGGGGGATGATCCATACTTCAACAAGTTGATTCGCATTCTAGCTACCAGATGCATGTCACAGGCAGTTTACTTCTGTAGTGGGGACCTCACTCCCCCCGAGTTTTATCATTACGGGCTTGCAACGCTTCTTTACACGCATTTCACCTCTCCTATTAGGAGATACGCAGATGTTGTTGTACACAGGTTGCTTGCGGCATCTTTAGGGATATACAAGCTTCCAAACATATTCCAAGACAGACCCCAGCTTACCAGTATCGCTGACAATTTGAATTATCGGCATAGGAATGCCCAGATGGCGAGCCGGGCCTCAGTAGAGCTGCATACAATTATCTATTTTAGGAAAAGGCCCACGGATACGGAGGCCAGAATAGTGAAATTAAGATCCAATGGATTTATTGTTTTTGTGCCCAAGTATGGTATTGAAGGACCAGTCTATTTAATGGCAAGAGGGGAGAAAGGAGGGGGAGAATGGGTAGTAGATGAGCAACAGCAGAAGGTTAAAAAGATTGATGGTAGTGTTTCCTACAGTGTTCTTCAGTCAGTAAGGATTCATATGGAGGTTGTCGAACCCCAGCCCAACCGGCCGAAACTCCAACTTACCCTTACCTAA

Network for GWHGAAZE015049

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13638.7	PIN_4	54	177	2.10E-15
PF17216.4	Rrp44_CSD1	219	307	4.70E-13
PF17849.2	OB_Dis3	373	440	2.10E-17
PF00773.20	RNB	471	652	1.60E-54
PF00773.20	RNB	680	763	1.70E-17
PF17215.4	Rrp44_S1	815	884	5.60E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12585	DIS3, RRP44	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0003723	molecular_function	RNA binding
GO:0004540	molecular_function	ribonuclease activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.087
	SRR3591706	second leaf	14.418
	SRR3591707	mature leaf	13.241
	SRR3591708	Shoot apex	21.751
	SRR3591709	Stem	21.681
	SRR3591710	White floral bud	22.897
	SRR3591711	White flower	23.866
	SRR3591712	Green floral bud	24.059
	SRR3591713	Yellow flower	22.895
SRP173429	SRR8316895	Juvenile bud stage	13.912
	SRR8316896	Juvenile bud stage	21.710
	SRR8316897	Juvenile bud stage	8.267
	SRR8316894	Third green stage	9.587
	SRR8316900	Third green stage	20.947
	SRR8316901	Third green stage	18.985
	SRR8316898	Complete white stage	7.752
	SRR8316899	Complete white stage	25.116
	SRR8316903	Complete white stage	15.783
	SRR8316902	Silver flowering stage	10.867
	SRR8316904	Silver flowering stage	18.359
	SRR8316905	Silver flowering stage	9.119
	SRR8316906	Gold flowering stage	29.866
	SRR8316907	Gold flowering stage	28.970
	SRR8316908	Gold flowering stage	29.127
SRP132670	SRR6706286	Control	20.696
	SRR6706287	Light intensity 50%	21.042
	SRR6706288	Light intensity 20%	22.313
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.924
	CNS0095593	Slightly white alabastrum(diploid) 2	13.499
	CNS0095594	Slightly white alabastrum(diploid) 3	12.788
	CNS0095595	Whole white alabastrum(diploid) 2	11.228
	CNS0095596	Whole white alabastrum(diploid) 3	8.453
	CNS0095597	Whole white alabastrum(diploid) 4	8.963
	CNS0095598	Silvery flower (diploied) 1	13.996
	CNS0095599	Silvery flower (diploied) 2	11.796
	CNS0095600	Silvery flower (diploied) 3	19.851
	CNS0095601	Golden flower (diploid) 1	11.439
	CNS0095602	Golden flower (diploid) 2	18.332
	CNS0095603	Golden flower (diploid) 3	18.748
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.210
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.649
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.451
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.910
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.432
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.598
	CNS0095610	Silvery flower (tetraploid) 1	24.809
	CNS0095611	Silvery flower (tetraploid) 2	19.785
	CNS0095612	Silvery flower (tetraploid) 3	22.423
	CNS0095613	Golden flower (tetraploid) 1	13.247
	CNS0095614	Golden flower (tetraploid) 2	18.703
	CNS0095615	Golden flower (tetraploid) 3	21.462
CRA001975	CRR073297	Stem 1	21.163
	CRR073298	Stem 2	20.351
	CRR073299	Stem 3	16.682
	CRR073300	Leaf 1	22.988
	CRR073301	Leaf 2	20.304
	CRR073302	Leaf 3	17.352
	CRR073303	Juvenile bud 1	17.920
	CRR073304	Juvenile bud 2	12.749
	CRR073305	Juvenile bud 3	20.418
	CRR073306	Third green 1	8.296
	CRR073307	Third green 2	7.491
	CRR073308	Third green 3	8.963
	CRR073309	Second white 1	6.724
	CRR073310	Second white 2	14.299
	CRR073311	Second white 3	16.068
	CRR073312	Silver flowering 1	11.659
	CRR073313	Silver flowering 2	11.730
	CRR073314	Silver flowering 3	10.319
	CRR073315	Gold flowering 1	7.002
	CRR073316	Gold flowering 2	14.702
	CRR073317	Gold flowering 3	8.771
	CRR073318	Tawny withering 1	15.739
	CRR073319	Tawny withering 2	11.121
	CRR073320	Tawny withering 3	14.254