Gene detail

Detail information of GWHGAAZE015040

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP01781.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|P51568\|AFC3_ARATH	3E-47	Serine/threonine-protein kinase AFC3
trEMBL	tr\|A0A068TZW5\|A0A068TZW5_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313\|EMBL:CDP01781.1}
TAIR10	AT4G35500.1	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	23726626	23730480	-
GWHAAZE00000004	mRNA	23726626	23730480	-
GWHAAZE00000004	exon	23726626	23726946	-
GWHAAZE00000004	exon	23727038	23727085	-
GWHAAZE00000004	exon	23727683	23728468	-
GWHAAZE00000004	exon	23729997	23730480	-
GWHAAZE00000004	five_prime_UTR	23730180	23730480	-
GWHAAZE00000004	CDS	23729997	23730179	-
GWHAAZE00000004	CDS	23727683	23728468	-
GWHAAZE00000004	CDS	23727038	23727085	-
GWHAAZE00000004	CDS	23726626	23726946	-

Transcript Sequence
>GWHTAAZE015054 CCAAAGCAACAAGAAGAATATCATTTATTCAAAATAAATAAATAAATAAAAGAGAGAAGGAAAAGTGGAGAAGAGTCTTCTATGGGAGGCCACACAGACACCCCAAAATATTAACCAAAATAAATATTTTTTTCTCTCTCTTCCTTTTCTCTCTCTACATCGCAATTTCGAAGCAATAGATAAAATAACAACTGTATAAACGAAGGAAGATTCATCTTGCAATTCGTACCGATTCGAAATATATTAATCGGTGAATAAGGATTTGATTTGGAGGTGTATTAAGAGAGATTCGAAAGCGATCATGTCTTGTTCATCATCATCAGGTTCCGAAGAAGAAGATGAAGGAATCGATTCGTACAGGAAAGGAGGATACCACGCTGTTAGACTCGGCGATTCGTTCGCCCGAGGACGGTACATCGCACAAAGGAAGCTCGGTTGGGGCGAGTTTTCCACTGTTTGGCTCGCATACGATACACAGACTTCCAAATACGTAGCTCTTAAGATCCAGAAAAGTGCACCACAATTTGCTCAGGCCGCTCTCCATGAAATAGAAATTCTTTCTGCTATAGCTAAAGGTGACCCCTCAAATACCAAGTATGTTGTACAACTTATTGACCAATTCAAACACAGTGGCCCAAATGGACAGCATTTGTGCATGGTCCTTGAATTTCTCGGTGATAGCTTACTCCAGCTGATAAGATATAACCGTTATAAAGGCCTCGAGTTGAATAAAGTTAGGGAGATATGCAAATGCATATTGACTGGTCTGGATTATTTACATAGAGAACTTGGTATAATACACACAGACTTAAAGCCCGAAAATATTCTTCTCATTTCCACCATTAATCCTTCCAAAGATCCAGTTAGGTCAGGTGTGACCCCCATTCTTGATAGGCCTGAGGGTAATCCCAATGGAGCAACCATAAGTATTATTGAGAGAAAGCTAAAGCAAAGGGCTAAGAGAGCAGTCGCTAGGATATCTGAAAGACGAGTTTCCATGGGGGGGATGGGAGCGGCTCCAAAGCCCGCAAGATGCTTGGATGGGATTGATGTGAGGTGCAAAGTTGTCGATTTTGGGAATGCGTGTTGGGCTGATAAGCAGTTTGCGGAAGAAATTCAAACAAGACAGTATAGGGCCCCTGAAGTTGTATTACAGTCTGGGTATTCTTTCTCTGTCGATATGTGGTCATTTGCTTGCACGGCCTTTGAGCTTGCTACTGGGGAGATGATGTTTGCCCCCAAGGGTGGACAAGGTTTCAGCGAAGACGAGGACCACCTCGCTTTAATGATGGAGCTCCTCGGAAAGATGCCACGAAAGATAGCCACCACTGGGGCTCGGTCCAAAGATTACTTCGATAGACATGGAGACCTAAAGAGGATCCGCAGGCTTAAATACTGGCCACTCGATCGACTAATGATTGAAAAATTCAAATTACCTGAAGCCGATGCTAAAGAGTTTGCAGAGTTTCTCTCTCCTCTCCTCGACTTTGCTCCGGAGAAGCGGCCCACCGCCCAGCAGTGCTTGCAGCATCCGTGGCTCAACATCAAGGGCTTGACCAGTAGCGATGTGAAGAGCGAATCTAGCCTAGGTAAGGTGGATGTTGGGATGAGCAAGCTTCAGATTAAGGCGGGTAAATGA

Network for GWHGAAZE015040

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	39	178	3.60E-23
PF00069.26	Pkinase	252	413	5.00E-23

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_SRPK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	79.750
	SRR3591706	second leaf	23.515
	SRR3591707	mature leaf	35.998
	SRR3591708	Shoot apex	25.074
	SRR3591709	Stem	76.324
	SRR3591710	White floral bud	94.442
	SRR3591711	White flower	58.102
	SRR3591712	Green floral bud	58.302
	SRR3591713	Yellow flower	45.539
SRP173429	SRR8316895	Juvenile bud stage	23.009
	SRR8316896	Juvenile bud stage	39.896
	SRR8316897	Juvenile bud stage	20.576
	SRR8316894	Third green stage	14.271
	SRR8316900	Third green stage	51.574
	SRR8316901	Third green stage	56.686
	SRR8316898	Complete white stage	61.244
	SRR8316899	Complete white stage	85.574
	SRR8316903	Complete white stage	78.481
	SRR8316902	Silver flowering stage	69.454
	SRR8316904	Silver flowering stage	72.500
	SRR8316905	Silver flowering stage	40.977
	SRR8316906	Gold flowering stage	99.698
	SRR8316907	Gold flowering stage	90.125
	SRR8316908	Gold flowering stage	101.941
SRP132670	SRR6706286	Control	47.284
	SRR6706287	Light intensity 50%	43.363
	SRR6706288	Light intensity 20%	41.595
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	42.235
	CNS0095593	Slightly white alabastrum(diploid) 2	40.822
	CNS0095594	Slightly white alabastrum(diploid) 3	42.913
	CNS0095595	Whole white alabastrum(diploid) 2	57.152
	CNS0095596	Whole white alabastrum(diploid) 3	60.195
	CNS0095597	Whole white alabastrum(diploid) 4	59.887
	CNS0095598	Silvery flower (diploied) 1	35.868
	CNS0095599	Silvery flower (diploied) 2	37.243
	CNS0095600	Silvery flower (diploied) 3	90.135
	CNS0095601	Golden flower (diploid) 1	29.436
	CNS0095602	Golden flower (diploid) 2	61.245
	CNS0095603	Golden flower (diploid) 3	61.219
	CNS0095604	Slightly white alabastrum(tetraploid) 1	69.185
	CNS0095605	Slightly white alabastrum(tetraploid) 2	75.378
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.272
	CNS0095607	Whole white alabastrum(tetraploid) 1	107.587
	CNS0095608	Whole white alabastrum(tetraploid) 2	115.472
	CNS0095609	Whole white alabastrum(tetraploid) 3	71.457
	CNS0095610	Silvery flower (tetraploid) 1	55.942
	CNS0095611	Silvery flower (tetraploid) 2	58.067
	CNS0095612	Silvery flower (tetraploid) 3	60.434
	CNS0095613	Golden flower (tetraploid) 1	38.688
	CNS0095614	Golden flower (tetraploid) 2	46.326
	CNS0095615	Golden flower (tetraploid) 3	77.571
CRA001975	CRR073297	Stem 1	27.693
	CRR073298	Stem 2	21.935
	CRR073299	Stem 3	22.385
	CRR073300	Leaf 1	34.080
	CRR073301	Leaf 2	35.490
	CRR073302	Leaf 3	25.826
	CRR073303	Juvenile bud 1	40.482
	CRR073304	Juvenile bud 2	36.117
	CRR073305	Juvenile bud 3	34.617
	CRR073306	Third green 1	95.304
	CRR073307	Third green 2	101.922
	CRR073308	Third green 3	98.687
	CRR073309	Second white 1	34.829
	CRR073310	Second white 2	48.785
	CRR073311	Second white 3	35.503
	CRR073312	Silver flowering 1	33.925
	CRR073313	Silver flowering 2	28.827
	CRR073314	Silver flowering 3	43.666
	CRR073315	Gold flowering 1	29.118
	CRR073316	Gold flowering 2	40.806
	CRR073317	Gold flowering 3	18.038
	CRR073318	Tawny withering 1	48.343
	CRR073319	Tawny withering 2	50.009
	CRR073320	Tawny withering 3	56.848