Gene detail

Detail information of GWHGAAZE015030

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006390181.1	2.16278E-48	hypothetical protein EUTSA_v10018908mg [Eutrema salsugineum]
Swissprot	tr\|Q8LF80\|CKB21_ARATH	7E-49	Cyclin-dependent kinase B2-1
trEMBL	tr\|V4KCI7\|V4KCI7_EUTSA	8E-49	Uncharacterized protein {ECO:0000313\|EMBL:ESQ27467.1}
TAIR10	AT1G76540.1	2E-37	cyclin-dependent kinase B2;1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	23598983	23601246	+
GWHAAZE00000004	mRNA	23598983	23601246	+
GWHAAZE00000004	exon	23598983	23599054	+
GWHAAZE00000004	exon	23599153	23599323	+
GWHAAZE00000004	exon	23600512	23600675	+
GWHAAZE00000004	exon	23600767	23600857	+
GWHAAZE00000004	exon	23601009	23601062	+
GWHAAZE00000004	exon	23601172	23601246	+
GWHAAZE00000004	CDS	23598983	23599054	+
GWHAAZE00000004	CDS	23599153	23599323	+
GWHAAZE00000004	CDS	23600512	23600675	+
GWHAAZE00000004	CDS	23600767	23600857	+
GWHAAZE00000004	CDS	23601009	23601062	+
GWHAAZE00000004	CDS	23601172	23601246	+

Transcript Sequence
>GWHTAAZE015044 ATGGAATTAATGCCAACTAACTTGGGTGCATACCTAAATGAACAGAATGCTGCACATCCAGTCAATATCAAGGAATTTATGAAGCAATTGCTTCAAGGACTCTCATTTATTCACTCTTACGGTATTGCACATCGTGATCTAAAGCCCGGAAATGTGCTTTATGATCCTGCATCGGGACGGGTTAAGATAGCCGACTTCGGTCTATCTAAACTTATTGTTCCTAATGAGCAGAATAGCGCTAGGATCGGTACCGTGAACTACAGGGCACCAGAGGTCCTGATGGGGGACCGGATGTATGATATGAAGGTTGATCTGTGGGCTGCCGGTTGCATTTTCTCTCAGCTTCTAACGAAACGAGTTTGCTTCCAAAATAACTCGAGTTTGACTGTGCCTCTGGATGTTTTTAAGATTTTGGGAACACCCATGGAGGAGAGGTGGGTCGGGGTCGAACTTTTGACTCTACCGGGTTACATCAATGACTATGAAGAAGCTGGTGCGGGTATTGAGACCCTTGTCCCAGAGGTGGAGGGTGATGCTTTGGACTTACTCTCGAGGCTCCTGTGTTTGTATCCTAATGAGAGGATTTCAGCGGTGGATGCCCTCGAGCATCCATATTTCAGGGAATAG

Network for GWHGAAZE015030

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	1	206	3.30E-45

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_CDK-Pl

KEGG pathway

KO	Enzyme	pathway	mapID
K02206	CDK2	FoxO signaling pathway	map04068
		PI3K-Akt signaling pathway	map04151
		Cell cycle	map04110
		Oocyte meiosis	map04114
		p53 signaling pathway	map04115
		Cellular senescence	map04218
		Progesterone-mediated oocyte maturation	map04914

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.103
	SRR3591707	mature leaf	0.126
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.274
	SRR3591710	White floral bud	0.463
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.438
	SRR3591713	Yellow flower	0.086
SRP173429	SRR8316895	Juvenile bud stage	0.984
	SRR8316896	Juvenile bud stage	1.423
	SRR8316897	Juvenile bud stage	0.171
	SRR8316894	Third green stage	0.162
	SRR8316900	Third green stage	0.774
	SRR8316901	Third green stage	0.549
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	1.153
	SRR8316903	Complete white stage	0.082
	SRR8316902	Silver flowering stage	0.364
	SRR8316904	Silver flowering stage	0.124
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.389
	SRR8316907	Gold flowering stage	1.322
	SRR8316908	Gold flowering stage	0.180
SRP132670	SRR6706286	Control	0.100
	SRR6706287	Light intensity 50%	0.275
	SRR6706288	Light intensity 20%	0.405
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.173
	CNS0095593	Slightly white alabastrum(diploid) 2	1.774
	CNS0095594	Slightly white alabastrum(diploid) 3	1.658
	CNS0095595	Whole white alabastrum(diploid) 2	1.247
	CNS0095596	Whole white alabastrum(diploid) 3	0.555
	CNS0095597	Whole white alabastrum(diploid) 4	1.148
	CNS0095598	Silvery flower (diploied) 1	0.050
	CNS0095599	Silvery flower (diploied) 2	0.202
	CNS0095600	Silvery flower (diploied) 3	0.103
	CNS0095601	Golden flower (diploid) 1	0.600
	CNS0095602	Golden flower (diploid) 2	0.113
	CNS0095603	Golden flower (diploid) 3	0.040
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.747
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.818
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.252
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.374
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.640
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.111
	CNS0095610	Silvery flower (tetraploid) 1	0.163
	CNS0095611	Silvery flower (tetraploid) 2	0.284
	CNS0095612	Silvery flower (tetraploid) 3	0.375
	CNS0095613	Golden flower (tetraploid) 1	0.081
	CNS0095614	Golden flower (tetraploid) 2	0.499
	CNS0095615	Golden flower (tetraploid) 3	0.034
CRA001975	CRR073297	Stem 1	0.305
	CRR073298	Stem 2	0.224
	CRR073299	Stem 3	0.512
	CRR073300	Leaf 1	0.707
	CRR073301	Leaf 2	0.129
	CRR073302	Leaf 3	0.107
	CRR073303	Juvenile bud 1	1.431
	CRR073304	Juvenile bud 2	0.120
	CRR073305	Juvenile bud 3	0.845
	CRR073306	Third green 1	0.165
	CRR073307	Third green 2	0.083
	CRR073308	Third green 3	0.070
	CRR073309	Second white 1	0.109
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.024
	CRR073315	Gold flowering 1	0.061
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	1.157