Gene detail

Detail information of GWHGAAZE015028

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006390181.1	4.92118E-47	hypothetical protein EUTSA_v10018908mg [Eutrema salsugineum]
Swissprot	tr\|Q8LF80\|CKB21_ARATH	2E-48	Cyclin-dependent kinase B2-1
trEMBL	tr\|V4KCI7\|V4KCI7_EUTSA	2E-47	Uncharacterized protein {ECO:0000313\|EMBL:ESQ27467.1}
TAIR10	AT1G76540.1	8E-42	cyclin-dependent kinase B2;1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	23522839	23526685	+
GWHAAZE00000004	mRNA	23522839	23526685	+
GWHAAZE00000004	exon	23522839	23523026	+
GWHAAZE00000004	exon	23523765	23523879	+
GWHAAZE00000004	exon	23523971	23524141	+
GWHAAZE00000004	exon	23524970	23525131	+
GWHAAZE00000004	exon	23525761	23525912	+
GWHAAZE00000004	exon	23525987	23526071	+
GWHAAZE00000004	exon	23526255	23526308	+
GWHAAZE00000004	exon	23526422	23526685	+
GWHAAZE00000004	CDS	23522839	23523026	+
GWHAAZE00000004	CDS	23523765	23523879	+
GWHAAZE00000004	CDS	23523971	23524141	+
GWHAAZE00000004	CDS	23524970	23525131	+
GWHAAZE00000004	CDS	23525761	23525912	+
GWHAAZE00000004	CDS	23525987	23526071	+
GWHAAZE00000004	CDS	23526255	23526308	+
GWHAAZE00000004	CDS	23526422	23526496	+
GWHAAZE00000004	three_prime_UTR	23526497	23526685	+

Transcript Sequence
>GWHTAAZE015042 ATGCAGAGATATACTATAAAGGATTTACTTGGTGCTGGCGGGTTCGGAGAAGTCTTTAAGGCAATTCGAAATGTAGATCAACAGGAAGTTGCTCTGAAAATTATTAACCTACCTGAGATGGAGTTGTCACCCAGGTTGGCCAGGGAGTTATTTTTCCTGAATTCTTTGAAGCATGAAAATATCATCCGGTCAAATTTCTATTGGGTGGGTCAAGGAAGGGTATTGATTGATATGGAGCTCATGGAGTTGGATCTGAATATGTACATAACCGGGTCCAATGTTAAACAGCCACCCGGAATCAAGAATGTTATGAAGCAATTGCTTCAAGGCTTATGTTTTATGCATTCTTGTGGGATTGCGCACCGGGACTTAAAACCCAGAAATGTGCTTCTGGAACCTGGATCGGGACGGGTAAAGATTGCAGATTTTGGACTAGCTAAACTCATACTACCTAATGAAGAGAACAGTGCAGGGGTATTTTCCCCCATGGGTTCTAGTAAAGAAAAATGCCCAAATCAATCAAATCACTCTTGGGTTCATCCACCTATCATTAGTTGGTGCTGGGCCATTTGCGAGAATGCAGAGGCGGTGTTGCCAGAAATACAGGGGATTGAGGGGTTTGGTGGGCCAGTTGTGCTTGGCACCATGTACTATAGGGCCCCTGAAGTCCTGATGGGGGACAAGATGTACAATACAAAGGTAGATATGTGGGCAACAGGCTGTATTTTTGCTGAGCTCCTGACAAACCAAGTTTGCTTCCACAATGAATCGAGTGTGGGCATGCTTGTGATTTTTGGAACACCTGATGAGGAGAGGTGGGTTGAAGTTTCAACATTAGAGGGCTACATCCACGAATATGAAGTAGATGGTTCTGGTATTGAGACCCTTGTTCCAGAAGTGGAGGGTGTTGCTTTGGACTTACTCTCGAGGCTTCTGTGCTTGTATCCTGATGAGAGGATTTCAGCGCTGGACGCCCTAGAGCATCCATATTTTAGTGACTAGTGTTGATATCATTTTTGACTTTTCATCTATGCAGAAGTGTAAGGAGTTTTAGTACTGATGATTTTATTAGGTTTATAGTTGGTACTTGGATTATTAGGGTCTGGAGTTTTAGTACTAGTACTAGCGTGGATATTTTTTACTTAACTGCTGTCATTTTTATTTGATATGCAAGTGGATTTGATGATTTTA

Network for GWHGAAZE015028

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	4	157	3.00E-35
PF00069.26	Pkinase	212	331	6.20E-18

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_MAPK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.767
	SRR3591706	second leaf	0.841
	SRR3591707	mature leaf	2.558
	SRR3591708	Shoot apex	6.230
	SRR3591709	Stem	3.404
	SRR3591710	White floral bud	1.324
	SRR3591711	White flower	1.208
	SRR3591712	Green floral bud	1.779
	SRR3591713	Yellow flower	2.348
SRP173429	SRR8316895	Juvenile bud stage	2.762
	SRR8316896	Juvenile bud stage	2.834
	SRR8316897	Juvenile bud stage	1.763
	SRR8316894	Third green stage	0.911
	SRR8316900	Third green stage	2.773
	SRR8316901	Third green stage	3.147
	SRR8316898	Complete white stage	0.984
	SRR8316899	Complete white stage	4.981
	SRR8316903	Complete white stage	1.390
	SRR8316902	Silver flowering stage	1.351
	SRR8316904	Silver flowering stage	1.983
	SRR8316905	Silver flowering stage	0.653
	SRR8316906	Gold flowering stage	1.747
	SRR8316907	Gold flowering stage	1.775
	SRR8316908	Gold flowering stage	1.556
SRP132670	SRR6706286	Control	2.001
	SRR6706287	Light intensity 50%	2.239
	SRR6706288	Light intensity 20%	2.521
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.352
	CNS0095593	Slightly white alabastrum(diploid) 2	2.522
	CNS0095594	Slightly white alabastrum(diploid) 3	1.818
	CNS0095595	Whole white alabastrum(diploid) 2	2.280
	CNS0095596	Whole white alabastrum(diploid) 3	1.301
	CNS0095597	Whole white alabastrum(diploid) 4	3.895
	CNS0095598	Silvery flower (diploied) 1	1.902
	CNS0095599	Silvery flower (diploied) 2	2.606
	CNS0095600	Silvery flower (diploied) 3	1.441
	CNS0095601	Golden flower (diploid) 1	2.137
	CNS0095602	Golden flower (diploid) 2	1.122
	CNS0095603	Golden flower (diploid) 3	1.062
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.464
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.608
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.359
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.898
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.903
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.618
	CNS0095610	Silvery flower (tetraploid) 1	1.643
	CNS0095611	Silvery flower (tetraploid) 2	1.802
	CNS0095612	Silvery flower (tetraploid) 3	1.700
	CNS0095613	Golden flower (tetraploid) 1	1.790
	CNS0095614	Golden flower (tetraploid) 2	1.803
	CNS0095615	Golden flower (tetraploid) 3	1.777
CRA001975	CRR073297	Stem 1	0.581
	CRR073298	Stem 2	0.461
	CRR073299	Stem 3	0.725
	CRR073300	Leaf 1	2.287
	CRR073301	Leaf 2	1.560
	CRR073302	Leaf 3	0.474
	CRR073303	Juvenile bud 1	0.698
	CRR073304	Juvenile bud 2	0.294
	CRR073305	Juvenile bud 3	0.723
	CRR073306	Third green 1	0.251
	CRR073307	Third green 2	0.170
	CRR073308	Third green 3	0.033
	CRR073309	Second white 1	0.299
	CRR073310	Second white 2	0.046
	CRR073311	Second white 3	0.154
	CRR073312	Silver flowering 1	0.215
	CRR073313	Silver flowering 2	0.045
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.624
	CRR073316	Gold flowering 2	0.592
	CRR073317	Gold flowering 3	0.198
	CRR073318	Tawny withering 1	0.927
	CRR073319	Tawny withering 2	1.361
	CRR073320	Tawny withering 3	2.199