Gene detail

Detail information of GWHGAAZE015023

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011096982.1	1.4366E-157	PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic [Sesamum indicum]
Swissprot	tr\|P27450\|CX32_ARATH	5E-112	Probable serine/threonine-protein kinase Cx32, chloroplastic (Precursor)
trEMBL	tr\|A0A068U2G5\|A0A068U2G5_COFCA	1E-156	Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313\|EMBL:CDP01798.1}
TAIR10	AT2G17220.2	1E-87	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	23457486	23461779	-
GWHAAZE00000004	mRNA	23457486	23461779	-
GWHAAZE00000004	exon	23461698	23461779	-
GWHAAZE00000004	exon	23461100	23461372	-
GWHAAZE00000004	exon	23459442	23459584	-
GWHAAZE00000004	exon	23458492	23458615	-
GWHAAZE00000004	exon	23457486	23457862	-
GWHAAZE00000004	CDS	23461698	23461779	-
GWHAAZE00000004	CDS	23461100	23461372	-
GWHAAZE00000004	CDS	23459442	23459584	-
GWHAAZE00000004	CDS	23458492	23458615	-
GWHAAZE00000004	CDS	23457486	23457862	-

Transcript Sequence
>GWHTAAZE015037 ATGGGTAATTGCTTGCAAAAGCAGGCCAGTGAATCTAGCAATATCACTAACCGTAGCATCTCCACTAGGCCTTCCACTTCAGGTACATCAAATACATATTCAGGTACAAACAGCAGTTTCGGCCAATTTTTGGGGGATGAGAATTATTTGAGTGGAGAAATATTGCCAACGCCGAATCTGAAGATGTATAGCTTTGCAGATTTGAAGAGCGCGACGAGGAATTTTAGGTCTGATACAGTGTTGGGTGTTGGAGGTTTTGGGACTGTGTTTAAAGGATGGGTGGATGAGAAGACTCTTGCTCCGGCAAGATTTGGTACCGGAATGATTGTTGCTATCAAGAAATTGAACCATGAAAGGAGTGCAGCTGTTGAACCACTTTCTTGGAAGATACGGCTCAAAATAGCCATAGGTGCAGCACGGGGCCTAGCTTTCTTGCATAGTTTGGACAAGAAAATCATTTACAGAGACTTCAAGGCTTCTAATATTCTGCTTGATGGGAACTACAATGCAAAAATAGCTGATTTTGGCTTGGCGAAACTGGGGCCCTCAGGTGGAGAATCACATGTGACAACACGAATCATGGGTACATATGGTTATGCTGCTCCTGAATACGTTGCAACAGGTCATTTATATGTGAAGAGCGATGTGTACGGCTTCGGTGTTGTGCTGCTTGAGATGCTGACCGGCCTACGAGCACTAGATATGAAACGGCAGAGCGAACAGCATAACTTAGTTGAATGGGCTAAGCCCCTTCTCTCTCAGAGAAAGAAACTGAAGACCATTATGGACACGCGAATCGAAGGCCAATATTCTTCCCAGGCGGCATTCCAGGCTACTCATCTCACTCTAAAATGCCTCGAATCTGAACCCAAAAAGCGCCCTGGCATGAACGAAGTTGTGGATGTGTTAGAAAAGATTGAAGCCATTAGGGGAAAACGAAAAGAATCCAAAATTAGCTCTGCTCATTCTTCATCATCATTAAGAAGTGATAAATATTAA

Network for GWHGAAZE015023

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	133	300	3.30E-29

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.165
	SRR3591706	second leaf	21.846
	SRR3591707	mature leaf	21.332
	SRR3591708	Shoot apex	17.610
	SRR3591709	Stem	30.535
	SRR3591710	White floral bud	13.153
	SRR3591711	White flower	14.056
	SRR3591712	Green floral bud	21.107
	SRR3591713	Yellow flower	13.449
SRP173429	SRR8316895	Juvenile bud stage	7.086
	SRR8316896	Juvenile bud stage	9.754
	SRR8316897	Juvenile bud stage	8.039
	SRR8316894	Third green stage	4.466
	SRR8316900	Third green stage	11.132
	SRR8316901	Third green stage	9.852
	SRR8316898	Complete white stage	1.749
	SRR8316899	Complete white stage	15.883
	SRR8316903	Complete white stage	3.378
	SRR8316902	Silver flowering stage	1.050
	SRR8316904	Silver flowering stage	0.864
	SRR8316905	Silver flowering stage	0.562
	SRR8316906	Gold flowering stage	1.591
	SRR8316907	Gold flowering stage	1.616
	SRR8316908	Gold flowering stage	3.825
SRP132670	SRR6706286	Control	8.858
	SRR6706287	Light intensity 50%	10.339
	SRR6706288	Light intensity 20%	12.220
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.636
	CNS0095593	Slightly white alabastrum(diploid) 2	9.133
	CNS0095594	Slightly white alabastrum(diploid) 3	7.050
	CNS0095595	Whole white alabastrum(diploid) 2	6.806
	CNS0095596	Whole white alabastrum(diploid) 3	5.692
	CNS0095597	Whole white alabastrum(diploid) 4	6.293
	CNS0095598	Silvery flower (diploied) 1	6.671
	CNS0095599	Silvery flower (diploied) 2	6.065
	CNS0095600	Silvery flower (diploied) 3	7.002
	CNS0095601	Golden flower (diploid) 1	6.834
	CNS0095602	Golden flower (diploid) 2	5.127
	CNS0095603	Golden flower (diploid) 3	4.358
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.504
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.577
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.354
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.707
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.175
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.336
	CNS0095610	Silvery flower (tetraploid) 1	10.254
	CNS0095611	Silvery flower (tetraploid) 2	10.160
	CNS0095612	Silvery flower (tetraploid) 3	5.456
	CNS0095613	Golden flower (tetraploid) 1	6.360
	CNS0095614	Golden flower (tetraploid) 2	5.280
	CNS0095615	Golden flower (tetraploid) 3	5.124
CRA001975	CRR073297	Stem 1	6.747
	CRR073298	Stem 2	6.052
	CRR073299	Stem 3	6.753
	CRR073300	Leaf 1	8.761
	CRR073301	Leaf 2	9.200
	CRR073302	Leaf 3	6.806
	CRR073303	Juvenile bud 1	7.833
	CRR073304	Juvenile bud 2	7.620
	CRR073305	Juvenile bud 3	8.440
	CRR073306	Third green 1	0.458
	CRR073307	Third green 2	0.967
	CRR073308	Third green 3	1.036
	CRR073309	Second white 1	0.112
	CRR073310	Second white 2	0.309
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.856
	CRR073313	Silver flowering 2	0.698
	CRR073314	Silver flowering 3	0.571
	CRR073315	Gold flowering 1	9.264
	CRR073316	Gold flowering 2	10.342
	CRR073317	Gold flowering 3	6.276
	CRR073318	Tawny withering 1	13.742
	CRR073319	Tawny withering 2	15.372
	CRR073320	Tawny withering 3	16.944