Gene detail

Detail information of GWHGAAZE015019

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010266172.1	0	PREDICTED: ubiquitin domain-containing protein DSK2a-like [Nelumbo nucifera]
Swissprot	tr\|Q9SII8\|DSK2B_ARATH	0	Ubiquitin domain-containing protein DSK2b
trEMBL	tr\|K4BAF0\|K4BAF0_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc02g082800.2.1}
TAIR10	AT2G17200.1	2E-141	ubiquitin family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	23415565	23424035	+
GWHAAZE00000004	mRNA	23415565	23424035	+
GWHAAZE00000004	exon	23415565	23415802	+
GWHAAZE00000004	exon	23417540	23418319	+
GWHAAZE00000004	exon	23419082	23419293	+
GWHAAZE00000004	exon	23419370	23419483	+
GWHAAZE00000004	exon	23421824	23421851	+
GWHAAZE00000004	exon	23423348	23423437	+
GWHAAZE00000004	exon	23423887	23424035	+
GWHAAZE00000004	CDS	23415565	23415802	+
GWHAAZE00000004	CDS	23417540	23418319	+
GWHAAZE00000004	CDS	23419082	23419293	+
GWHAAZE00000004	CDS	23419370	23419483	+
GWHAAZE00000004	CDS	23421824	23421851	+
GWHAAZE00000004	CDS	23423348	23423437	+
GWHAAZE00000004	CDS	23423887	23424035	+

Transcript Sequence
>GWHTAAZE015033 ATGGGCGGTGGTGATACTGTTGCAACAGACGGTACCGAATCGAACAACGCCGGTGGGGCAGTCACAGTCAACGTCCGATGCTCCAATGGCTCAAAGTTCTCCGTACAGATTCGCCTGGAATCTACCGTCGGATCGTTCAAGTCCGTTCTCGCTCAGAACTGTGATATTCCGGCCGAACAGCAGCGATTGATTTACAAAGGACGGATCCTCAAGGATGATCAAAGCCTTGAGAGCTACGGATTGGAGCCAGACCACACTGTTCACTTGGTTCGTGGTTTTGCACCAGCTGCTGTTGTAAACACTACAGGAGGTACCAATACTGGAGGTCCAAATGCAATTCCAAGTGCTGCAAGGGGTGTAGATTCCAATGACAGTGGGGCACTGGGAAGATCTGAATTTGGCCCTCCATTATTTCCAGGACTTGGTTCAAACAGATTAGGAAGCAGTGGTGGTGGTTTATTTGGAGCTGGACTTCCAGAATTTGAACAAGTGCAGCAACAGTTAACTCAAAATCCCAACATGATGAGAGAAACCATGGATATGCCCCTTGTTCAGAACCTAATGAGTAACCCAGACATTATGCGCAACATGATTATGAACAATCCTCAAATGCGCGAGATTATGGACCGAAACCCGGAGCTTGCACACATGCTCAACGATCCAAACACTCTCCGTCAGACTCTGGAAGCTGCTAGAAACCCTGAACTCATGCGTGAAATGATGCGGAATACCGACAGAGCAATGAGCAACATTGAATCTTCACCCGAGGGATTCAACATGCTTAGACGCATGTACGAAAATTTTCAAGAACCGATGCTGAACGCAGCAACAATGGCTGGGGATGCTAGGAATGACTTGAGCTCAAATCCATTTGCATCTCTTCTTGGTGCCCAAGGTGGTGGGTCTGGAGCAGGCAGAGATCAGTTGACTAGCACTGCATCTACTGGTTCTGAAACAACTGCTGAATCTCCTGCTCCGAATACCAATCCACTTCCTAACCCTTGGGCCTCTGCTGGTGCTGGAGCACAAACTAACACCACTACAAGGTCGAACCCTACTGTGCAGGCTAGGCCACCACCACTTGGTGGCTTAGGTGGACTTGGTTTCCCGGGTTTTGACGGAAGTTCAGGTTCCACACTGGACCCCAGTTCTCTGAATCAATTTATGCAAAACCCGGCAGTATCACAAATGATGCAAAGTCTTCTTTCTAATCCCCAATACATGAACCAGATTCTTGGTCTCAACCCCCAGATGCAAAACATGCTTGATGCCAATCCCCAACTTAGAGAGATGATGCAGAACCCTCAATTTGTCCGTCAGTTGACTTCTCCTGAGACAATACAGGGTACCAGTTCAAATGTTGGGGGACCAGGAGCACTCAACAACATGGGGCTGGAGACGCTGATGAACATGTTTGGTGGTCTTGGGATTGGAGGCCTCAATGCTCCCAATCAATCAAATGTGCCACCTGAAGAACTGTATGCCACTCAACTGGCGCAGCTACAAGATATGGGTTTCTTTGATGCCCAAGAAAATATAAGAGCACTAACTGCTACTGCAGGCAACGTTCATGCTGCGGTGGAACGGCTCTTGGGCAATCCTGGTTCATAG

Network for GWHGAAZE015019

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00240.24	ubiquitin	23	90	1.90E-20
PF00627.32	UBA	494	530	1.20E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04523	UBQLN, DSK2	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.708
	SRR3591706	second leaf	11.733
	SRR3591707	mature leaf	9.666
	SRR3591708	Shoot apex	17.340
	SRR3591709	Stem	16.615
	SRR3591710	White floral bud	12.526
	SRR3591711	White flower	10.451
	SRR3591712	Green floral bud	16.623
	SRR3591713	Yellow flower	7.336
SRP173429	SRR8316895	Juvenile bud stage	7.105
	SRR8316896	Juvenile bud stage	10.572
	SRR8316897	Juvenile bud stage	5.534
	SRR8316894	Third green stage	3.438
	SRR8316900	Third green stage	9.697
	SRR8316901	Third green stage	9.818
	SRR8316898	Complete white stage	2.950
	SRR8316899	Complete white stage	13.134
	SRR8316903	Complete white stage	6.151
	SRR8316902	Silver flowering stage	1.940
	SRR8316904	Silver flowering stage	3.233
	SRR8316905	Silver flowering stage	1.504
	SRR8316906	Gold flowering stage	6.041
	SRR8316907	Gold flowering stage	4.315
	SRR8316908	Gold flowering stage	5.978
SRP132670	SRR6706286	Control	13.693
	SRR6706287	Light intensity 50%	13.918
	SRR6706288	Light intensity 20%	13.800
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.136
	CNS0095593	Slightly white alabastrum(diploid) 2	6.315
	CNS0095594	Slightly white alabastrum(diploid) 3	5.602
	CNS0095595	Whole white alabastrum(diploid) 2	5.104
	CNS0095596	Whole white alabastrum(diploid) 3	6.046
	CNS0095597	Whole white alabastrum(diploid) 4	5.487
	CNS0095598	Silvery flower (diploied) 1	5.782
	CNS0095599	Silvery flower (diploied) 2	4.953
	CNS0095600	Silvery flower (diploied) 3	7.245
	CNS0095601	Golden flower (diploid) 1	6.743
	CNS0095602	Golden flower (diploid) 2	5.750
	CNS0095603	Golden flower (diploid) 3	6.427
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.285
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.124
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.935
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.647
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.380
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.297
	CNS0095610	Silvery flower (tetraploid) 1	7.321
	CNS0095611	Silvery flower (tetraploid) 2	11.586
	CNS0095612	Silvery flower (tetraploid) 3	7.406
	CNS0095613	Golden flower (tetraploid) 1	4.438
	CNS0095614	Golden flower (tetraploid) 2	7.773
	CNS0095615	Golden flower (tetraploid) 3	3.744
CRA001975	CRR073297	Stem 1	12.439
	CRR073298	Stem 2	12.095
	CRR073299	Stem 3	10.242
	CRR073300	Leaf 1	13.525
	CRR073301	Leaf 2	11.406
	CRR073302	Leaf 3	10.804
	CRR073303	Juvenile bud 1	10.402
	CRR073304	Juvenile bud 2	6.116
	CRR073305	Juvenile bud 3	13.694
	CRR073306	Third green 1	1.708
	CRR073307	Third green 2	2.262
	CRR073308	Third green 3	1.976
	CRR073309	Second white 1	1.533
	CRR073310	Second white 2	2.287
	CRR073311	Second white 3	1.843
	CRR073312	Silver flowering 1	2.679
	CRR073313	Silver flowering 2	2.109
	CRR073314	Silver flowering 3	2.606
	CRR073315	Gold flowering 1	2.723
	CRR073316	Gold flowering 2	4.576
	CRR073317	Gold flowering 3	2.545
	CRR073318	Tawny withering 1	6.662
	CRR073319	Tawny withering 2	4.889
	CRR073320	Tawny withering 3	6.985