Gene detail

Detail information of GWHGAAZE015012

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010259928.1	0	PREDICTED: isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [Nelumbo nucifera]
Swissprot	tr\|Q8LFC0\|IDH1_ARATH	0	Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial (Precursor)
trEMBL	tr\|A0A0A0KMQ6\|A0A0A0KMQ6_CUCSA	0	Uncharacterized protein {ECO:0000313\|EMBL:KGN48986.1}
TAIR10	AT4G35260.1	2E-145	isocitrate dehydrogenase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	23255581	23260917	-
GWHAAZE00000004	mRNA	23255581	23260917	-
GWHAAZE00000004	exon	23255581	23255855	-
GWHAAZE00000004	exon	23257316	23257394	-
GWHAAZE00000004	exon	23258642	23258881	-
GWHAAZE00000004	exon	23260639	23260917	-
GWHAAZE00000004	CDS	23260639	23260917	-
GWHAAZE00000004	CDS	23258642	23258881	-
GWHAAZE00000004	CDS	23257316	23257394	-
GWHAAZE00000004	CDS	23255581	23255855	-

Transcript Sequence
>GWHTAAZE015026 ATGAGCCGGTTCCCTCAGGAGGTTTTGGACTCGATCAAGAAGAACAAGGTGTGTTTGAAAGGCGGATTGATGACTCCGGTGGGAGGAGGAGTGAGTTCGTTGAATGTTCAGTTGAGGAAGGAATTGGATCTGTTTGCTTCGCTTGTGAATTGCTTCAATTTGCCTGGATTGCAAACGCGGCACGAGAATGTGGATATTGTTGTGATAAGGGAGAATACGGAGGGTGAGTACGCAGGGCTCGAGCACGAGGTTGTTCCTGGTGTTGTTGAGAGCCTTAAGGTGATAACAAAGTTCTGTTCAGAACGTATTGCAAGGTACGCCTTTGAGTATGCTTACCTTAACAACAGAAAGAAAGTGACAGCTGTGCACAAAGCCAACATTATGAAGCTTGCAGATGGTCTATTCTTGGAATCATGTCGAGAGGTCGCAACAAAATATCCTGGGATCACATACAACGAAATTATTGTGGACAACTGCTGCATGCAGCTTGTTTCAAAGCCTGAGCAGTTTGATGTAATGGTGACACCCAACCTTTATGGGAATTTAGTTGCAAATACCGCTGCTGGTATAGCTGGTGGCACCGGATTCATGCCAGGAGGAAATGTGGGGCCCGATCACGCCGTTTTTGAGCAAGGTGCTTCCGCAGGAAACGTGGGGCACTCAAAACTAATAGAGCAGAAGAAAGCAAACCCAGTGGCCCTTCTTCTCTCAGCAGCCATGATGCTGAGACATCTCCAGTTCCCCTCATTTGCAGACCGTTTGGAAACAGCTGTTAAATGCATTATAGCAGAAGGAAAATACCTCACCAAGGACCTTGGAGGAGACAGCACCACCCAAGAAGTTGTTGATGCAGTCATAGCAGCTCTAGACTAA

Network for GWHGAAZE015012

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00180.21	Iso_dh	3	285	2.00E-74

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00030	IDH3	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		Citrate cycle	map00020

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0006099	biological_process	tricarboxylic acid cycle
GO:0016616	molecular_function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0004449	molecular_function	isocitrate dehydrogenase (NAD+) activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	36.777
	SRR3591706	second leaf	7.746
	SRR3591707	mature leaf	6.975
	SRR3591708	Shoot apex	11.548
	SRR3591709	Stem	31.087
	SRR3591710	White floral bud	49.463
	SRR3591711	White flower	48.980
	SRR3591712	Green floral bud	91.817
	SRR3591713	Yellow flower	34.424
SRP173429	SRR8316895	Juvenile bud stage	29.227
	SRR8316896	Juvenile bud stage	62.040
	SRR8316897	Juvenile bud stage	30.151
	SRR8316894	Third green stage	26.328
	SRR8316900	Third green stage	118.168
	SRR8316901	Third green stage	110.602
	SRR8316898	Complete white stage	30.514
	SRR8316899	Complete white stage	52.742
	SRR8316903	Complete white stage	39.111
	SRR8316902	Silver flowering stage	32.368
	SRR8316904	Silver flowering stage	34.288
	SRR8316905	Silver flowering stage	12.011
	SRR8316906	Gold flowering stage	42.938
	SRR8316907	Gold flowering stage	43.911
	SRR8316908	Gold flowering stage	43.010
SRP132670	SRR6706286	Control	71.524
	SRR6706287	Light intensity 50%	69.373
	SRR6706288	Light intensity 20%	67.525
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	75.043
	CNS0095593	Slightly white alabastrum(diploid) 2	79.263
	CNS0095594	Slightly white alabastrum(diploid) 3	87.455
	CNS0095595	Whole white alabastrum(diploid) 2	100.995
	CNS0095596	Whole white alabastrum(diploid) 3	123.529
	CNS0095597	Whole white alabastrum(diploid) 4	98.254
	CNS0095598	Silvery flower (diploied) 1	21.194
	CNS0095599	Silvery flower (diploied) 2	28.852
	CNS0095600	Silvery flower (diploied) 3	45.249
	CNS0095601	Golden flower (diploid) 1	18.084
	CNS0095602	Golden flower (diploid) 2	29.784
	CNS0095603	Golden flower (diploid) 3	25.679
	CNS0095604	Slightly white alabastrum(tetraploid) 1	114.762
	CNS0095605	Slightly white alabastrum(tetraploid) 2	116.034
	CNS0095606	Slightly white alabastrum(tetraploid) 3	44.834
	CNS0095607	Whole white alabastrum(tetraploid) 1	153.695
	CNS0095608	Whole white alabastrum(tetraploid) 2	161.020
	CNS0095609	Whole white alabastrum(tetraploid) 3	127.071
	CNS0095610	Silvery flower (tetraploid) 1	62.563
	CNS0095611	Silvery flower (tetraploid) 2	44.179
	CNS0095612	Silvery flower (tetraploid) 3	64.816
	CNS0095613	Golden flower (tetraploid) 1	35.103
	CNS0095614	Golden flower (tetraploid) 2	42.665
	CNS0095615	Golden flower (tetraploid) 3	21.168
CRA001975	CRR073297	Stem 1	42.447
	CRR073298	Stem 2	42.823
	CRR073299	Stem 3	38.199
	CRR073300	Leaf 1	69.560
	CRR073301	Leaf 2	70.923
	CRR073302	Leaf 3	76.102
	CRR073303	Juvenile bud 1	97.611
	CRR073304	Juvenile bud 2	82.632
	CRR073305	Juvenile bud 3	63.318
	CRR073306	Third green 1	77.874
	CRR073307	Third green 2	84.389
	CRR073308	Third green 3	72.059
	CRR073309	Second white 1	63.631
	CRR073310	Second white 2	57.955
	CRR073311	Second white 3	53.184
	CRR073312	Silver flowering 1	50.043
	CRR073313	Silver flowering 2	48.336
	CRR073314	Silver flowering 3	46.018
	CRR073315	Gold flowering 1	15.299
	CRR073316	Gold flowering 2	14.273
	CRR073317	Gold flowering 3	10.906
	CRR073318	Tawny withering 1	42.285
	CRR073319	Tawny withering 2	62.725
	CRR073320	Tawny withering 3	48.679