Gene detail

Detail information of GWHGAAZE014978

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008241999.1	0	PREDICTED: probable serine/threonine-protein kinase drkD [Prunus mume]
Swissprot	tr\|Q2MHE4\|HT1_ARATH	3E-72	Serine/threonine-protein kinase HT1
trEMBL	tr\|A0A068U2J7\|A0A068U2J7_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313\|EMBL:CDP01833.1}
TAIR10	AT4G35780.1	0	ACT-like protein tyrosine kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	22762374	22771290	+
GWHAAZE00000004	mRNA	22762374	22771290	+
GWHAAZE00000004	exon	22762374	22762579	+
GWHAAZE00000004	exon	22763181	22763295	+
GWHAAZE00000004	exon	22763971	22764071	+
GWHAAZE00000004	exon	22764286	22764384	+
GWHAAZE00000004	exon	22765949	22766150	+
GWHAAZE00000004	exon	22766413	22766523	+
GWHAAZE00000004	exon	22767469	22767519	+
GWHAAZE00000004	exon	22768335	22768510	+
GWHAAZE00000004	exon	22768583	22768690	+
GWHAAZE00000004	exon	22768852	22768925	+
GWHAAZE00000004	exon	22769006	22769069	+
GWHAAZE00000004	exon	22769245	22769464	+
GWHAAZE00000004	exon	22769666	22769761	+
GWHAAZE00000004	exon	22770229	22770309	+
GWHAAZE00000004	exon	22770535	22770588	+
GWHAAZE00000004	exon	22770685	22770819	+
GWHAAZE00000004	exon	22770914	22771290	+
GWHAAZE00000004	CDS	22762374	22762579	+
GWHAAZE00000004	CDS	22763181	22763295	+
GWHAAZE00000004	CDS	22763971	22764071	+
GWHAAZE00000004	CDS	22764286	22764384	+
GWHAAZE00000004	CDS	22765949	22766150	+
GWHAAZE00000004	CDS	22766413	22766523	+
GWHAAZE00000004	CDS	22767469	22767519	+
GWHAAZE00000004	CDS	22768335	22768510	+
GWHAAZE00000004	CDS	22768583	22768690	+
GWHAAZE00000004	CDS	22768852	22768925	+
GWHAAZE00000004	CDS	22769006	22769069	+
GWHAAZE00000004	CDS	22769245	22769464	+
GWHAAZE00000004	CDS	22769666	22769761	+
GWHAAZE00000004	CDS	22770229	22770309	+
GWHAAZE00000004	CDS	22770535	22770588	+
GWHAAZE00000004	CDS	22770685	22770819	+
GWHAAZE00000004	CDS	22770914	22770994	+
GWHAAZE00000004	three_prime_UTR	22770995	22771290	+

Transcript Sequence
>GWHTAAZE014992 ATGGCGATGGAGGAAGACGACAACGAGAGTTGCGGTAGTAGAGCTGTGGACGTCGATTCGTCGGCGAAGCAAAATCGGCAGCAGAGGCAGAGGCTAGAGGTTTTCAACGAGGTCCTCACTCGCCTCCACGATATGAACCACGAAGAGGCCATGCTTCCTGATTTCGAAGACCAGCTCTGGCTCCATTTCAATCGTTTTCCTGCCAGATACGCAATGGATGTGAATGTGGAGAGGGCAGAAGATGTGCTCACACATAAAAGGCTACTGCATTTGGCAGAAGATCCTGCTTCTAGACCTGCATTTGATGTTCGTCTAGTGCAGGTTCATCCTACATCGCACGGGAATGCAACTGATTCTACTGATTTAGATTCCTCAATGAAAGAAGATGCCCAAAGTTATCCTAATCATTCTAGCCTCCACGGGTTTCACCCTCCACCCACCTTTGGCTCGTCACAAAATCTTGACGTGCTTGCACTTCAACCTAGTAAGTCTCATATTGATGAAGGCGATACCACTTCACGGGAACCCATCTCCTTCCCAAGGGCCAAGACAGAGAACCAGCTTCCCATTGTCCTGCTAGCCTTGAAACTATGTCACACGGGGGCAGAATGCAAAATTCACGAGATTGACAATTCTGCTGAACTTTTGTCCTCTGCAGACCGACATATTTCAGATGGCATTGTCATGAACAATGAGATTGAGGATGATGCTGTAAACCTTTATTTGACTTCCTTACTGTCTGAGGTCGGCTTGAACATTCAAGAAGCCCATGCTTTCTCCACCCTTGATGGCTTCTCCTTGGATGTTTTTGTTGTTGACGGGTGGCTTCACGAGGAAATTGAGCAGCTTAGAAGGGCATTGGAGAAGGAAATTTCAAATACTAAGGGGGCATCTTCTTCAAAACAACATTCACTAACCACAATCAATGAGCTTGGTCAAACGGGGTCTGAATCCATAAATGCCTATCTAAAGATACCTACTGATGGGACTGATGTCTGGGAAATCGATGCCAGCTTGCTGAAATTTGAAAACAAGGTTGCGTCTGGGTCATTTGGTGATCTGTATAAAGGCTCATATTGCAGTCAGGAAGTGGCTATTAAGGTCCTCAAACCCGAGCGAGTCAATCTAGATATGCTGAGAGAGTTTTCCCAGGAAGTCTTTATAATGAGGAAAATCAGGCACAAGAACGTTGTTCAGTTCTTAGGAGCATGTACGCGACCTCCAAACCTGTGCATTGTGACTGATGTTGTTCGCAATCACTATGAGGCATGGAGGTTCTTATTTGAAGGAAACAGTACTGCTTGGAGGGGAAGAGAACTGCTCTTTAGTGCCAATCTTTCTGTTTTATCAGAGTTCATGTCAAGAGGAAGCGTGTACAACTTCCTGCACAAACAAAGAGGGGCCTTTAAGCTTTCTACTCTACTCAAAGTAGCGATTGATGTATCAAAGGGAATGAATTATTTGCATCAAAATAATATAATCCACAGGGACCTGAAGACTGCCAATCTTTTGATGGATGAAAATGAAGTTGTTAAGGTTGCTGATTTTGGAGTGTCTAGAGTACAGACTCAATCCGGAGTGATGACTGCGGAAACTGGAACCTATCGTTGGATGGCTCCTGAGGTCATTGAACACAAACCATATGATCATAAGGCAGATGTTTTCAGTTTCGGAATAGTGCTATGGGAGCTTCTAACTGGAGAACTTCCCTACATGTACTTGACACCATTACAAGCTGCAGTAGGCGTGGTACAAAAGGGTTTACGGCCTACAATCCCTAAGAACACTCATCCAAAACTTGCAGAAGTGCTTGAGAGTTGCTGGCAACAAAACCCATCTCAGAGACCCAACTTCTCTTTAATCTTGGAAAACCTTCAGCAAATAGCCAAGGAGGTGGGGGATGGTGGAGAGGATCAGCACAAGGATAAATCAATCGGTGGATTTTTCTCGTCTTTTAGAAGGGGTCATCACTGAAGTTGTGGTTAATTTCCATAACAAAATCTCTTTCGATTGTACATATGTTGATGCATCACTTGTTTGAATTTTTCCGGGAAAATTCCTTCCCCCCCCCCACCCCCATCTTTCCTATGTTCCCTTTCTTGTTTTCTTTTGTTAGTCTTGTGTGTAGGTTAGAGTCCACAATCGGATTTTGAAGTCTCTTATATTGTTCTCTTTTTTGGTCAAAATTTGAAAGTGATTCTGATAAATTGATTTTACTGAATAATGTTACATTTTTCTATGGAATTCAAACTTCAACTTCTTGACCACAA

Network for GWHGAAZE014978

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	340	418	3.80E-13
PF07714.18	PK_Tyr_Ser-Thr	445	625	3.60E-53

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL-Pl-4

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	62.068
	SRR3591706	second leaf	19.445
	SRR3591707	mature leaf	23.090
	SRR3591708	Shoot apex	26.170
	SRR3591709	Stem	53.472
	SRR3591710	White floral bud	69.618
	SRR3591711	White flower	47.116
	SRR3591712	Green floral bud	57.508
	SRR3591713	Yellow flower	49.945
SRP173429	SRR8316895	Juvenile bud stage	19.591
	SRR8316896	Juvenile bud stage	30.679
	SRR8316897	Juvenile bud stage	12.976
	SRR8316894	Third green stage	14.610
	SRR8316900	Third green stage	44.378
	SRR8316901	Third green stage	49.791
	SRR8316898	Complete white stage	36.006
	SRR8316899	Complete white stage	69.721
	SRR8316903	Complete white stage	64.178
	SRR8316902	Silver flowering stage	27.509
	SRR8316904	Silver flowering stage	46.226
	SRR8316905	Silver flowering stage	20.099
	SRR8316906	Gold flowering stage	62.633
	SRR8316907	Gold flowering stage	54.336
	SRR8316908	Gold flowering stage	61.619
SRP132670	SRR6706286	Control	46.976
	SRR6706287	Light intensity 50%	53.546
	SRR6706288	Light intensity 20%	51.621
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	34.007
	CNS0095593	Slightly white alabastrum(diploid) 2	33.706
	CNS0095594	Slightly white alabastrum(diploid) 3	31.834
	CNS0095595	Whole white alabastrum(diploid) 2	31.296
	CNS0095596	Whole white alabastrum(diploid) 3	43.454
	CNS0095597	Whole white alabastrum(diploid) 4	38.313
	CNS0095598	Silvery flower (diploied) 1	32.045
	CNS0095599	Silvery flower (diploied) 2	31.011
	CNS0095600	Silvery flower (diploied) 3	48.271
	CNS0095601	Golden flower (diploid) 1	39.631
	CNS0095602	Golden flower (diploid) 2	48.536
	CNS0095603	Golden flower (diploid) 3	49.895
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.335
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.201
	CNS0095606	Slightly white alabastrum(tetraploid) 3	33.935
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.531
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.958
	CNS0095609	Whole white alabastrum(tetraploid) 3	33.940
	CNS0095610	Silvery flower (tetraploid) 1	48.537
	CNS0095611	Silvery flower (tetraploid) 2	49.943
	CNS0095612	Silvery flower (tetraploid) 3	56.637
	CNS0095613	Golden flower (tetraploid) 1	95.752
	CNS0095614	Golden flower (tetraploid) 2	70.830
	CNS0095615	Golden flower (tetraploid) 3	372.227
CRA001975	CRR073297	Stem 1	28.945
	CRR073298	Stem 2	27.506
	CRR073299	Stem 3	19.809
	CRR073300	Leaf 1	59.852
	CRR073301	Leaf 2	43.698
	CRR073302	Leaf 3	31.645
	CRR073303	Juvenile bud 1	42.151
	CRR073304	Juvenile bud 2	40.502
	CRR073305	Juvenile bud 3	54.174
	CRR073306	Third green 1	25.239
	CRR073307	Third green 2	27.166
	CRR073308	Third green 3	28.692
	CRR073309	Second white 1	25.341
	CRR073310	Second white 2	28.273
	CRR073311	Second white 3	27.949
	CRR073312	Silver flowering 1	25.854
	CRR073313	Silver flowering 2	22.469
	CRR073314	Silver flowering 3	22.084
	CRR073315	Gold flowering 1	7.450
	CRR073316	Gold flowering 2	7.730
	CRR073317	Gold flowering 3	7.218
	CRR073318	Tawny withering 1	13.990
	CRR073319	Tawny withering 2	14.063
	CRR073320	Tawny withering 3	16.922