Gene detail

Detail information of GWHGAAZE014973

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009788032.1	PREDICTED: phospholipase D delta-like isoform X1 [Nicotiana sylvestris]
Swissprot	tr\|Q9C5Y0\|PLDD1_ARATH	Phospholipase D delta
trEMBL	tr\|K4BAK2\|K4BAK2_SOLLC	Phospholipase D {ECO:0000256\|PIRNR:PIRNR036470}
TAIR10	AT4G35790.2	phospholipase D delta

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	22626813	22639783	+
GWHAAZE00000004	mRNA	22626813	22639783	+
GWHAAZE00000004	exon	22626813	22627458	+
GWHAAZE00000004	exon	22627609	22627892	+
GWHAAZE00000004	exon	22630681	22630875	+
GWHAAZE00000004	exon	22634582	22634893	+
GWHAAZE00000004	exon	22634987	22635055	+
GWHAAZE00000004	exon	22635879	22635987	+
GWHAAZE00000004	exon	22636082	22636230	+
GWHAAZE00000004	exon	22637436	22637594	+
GWHAAZE00000004	exon	22638197	22638397	+
GWHAAZE00000004	exon	22639487	22639783	+
GWHAAZE00000004	CDS	22626813	22627458	+
GWHAAZE00000004	CDS	22627609	22627892	+
GWHAAZE00000004	CDS	22630681	22630875	+
GWHAAZE00000004	CDS	22634582	22634893	+
GWHAAZE00000004	CDS	22634987	22635055	+
GWHAAZE00000004	CDS	22635879	22635987	+
GWHAAZE00000004	CDS	22636082	22636230	+
GWHAAZE00000004	CDS	22637436	22637594	+
GWHAAZE00000004	CDS	22638197	22638397	+
GWHAAZE00000004	CDS	22639487	22639783	+

Transcript Sequence
>GWHTAAZE014987 ATGGCGGGTAACAACAACTCATCGGAGCATGTAGTTTACCTGCACGGTGACCTAGATCTCAGAATCATCGAAGCGCGTAGCTTGCCTAACATGGACTTCATCACCGGCCGTTTACGCGGCTGCTTCACCTGCGAGCCCTGCCGCCCCTCCTCCGGGGCCGGAACCCGCGGCGTCGGCGGTAAAGAGCACCACGCGAAGATCATCACCAGTGATCCTTACGTCACTGTGTCCGTCCCTCAGGCCACCGTTGCGAGGACACGTGTCCTTCCCAATTCGCAAAGCCCTAAGTGGAACGAACACTTCATTATCCCTCTCGCTCATCCAGTGGTGAATTTGGAGTTTCACGTTAAGGATAATGACTTGTTGGGAGCTGAGATTATGGGGACTGTGAAGTTTCCGGCCGAAAAGGTTGCTACTGGAGAGGTTATTAGTGGTTGGTTTCCGATCCTCGGAGCCAACGACGAGCCGCCGAAGCCGGACACTGCGCTTCATTTGGAAATGAAATTCATTCCGGTGGTGGAGAATCCTCTGTATAAGCATGGGATTGCTGGTGATCCCAAGCATTTAGGTGTGAGGAACACTTATTTTCCTTTGAGAAAGGGCTGTTCTGTTCGATTGTACCAAGATGCCCATGTCAGTTGTGAAGGTAAGCTTCCTCAGATTGAATTGGATGGAGGGAAGGTGTTTGAGCAGAATAGCTGTTGGGAAGATATATGCTATGCTATATCAGAGGCTCATCATATGATATATTTGGTTGGGTGGTCAATTTACCATAAAGTGAAGCTAGTAAGAGAGCCGAGTCGGCCCTTGCCCCGAGGAGGGGATCTAACCCTCGGTGAAATGCTCAGGTATAAGTCTCAAGAAGGTGTTCGAGTTTTGCTATTGATTTGGGATGATAGGACTTCGCACAATAAGTTTTTCATCAAAACGATTGTTGGAACTGCCTTTACACACCATCAGAAGTGTGTCATTGTAGATACCCAGGCATCTGGTAATAATCGAAAGATAACATCATTCATAGGTGGTCTTGATCTCTGTGATGGCCGCTATGATACGCCTGATCATCGATTATTTCGTGGTCTTGACACTGTATTTAAGGAAGATTATCATCAGCCAACATGCCCTGTAGGAAGCAAGGCTCCAAGGCAGCCATGGCACGACTTGCACAGCAGAATCGACGGTCCTGCTGCATATGATGTCCTTATTAACTTTGAGCAGCGCTGGAAAAAAGCAACAAGGTGGGCTGAATTTGCCATAATCAAGAAAAAGATGTCTGACTGGCATGATGATGCTATGATCAAGATAGAACGTATATCTTGGATACTAAGTCCTTCACGTCCTCCCGTTCCCAAAGATGTAAAATACACAATGATTCCAGCAGATGATCCCAAGTTATACGTTTCCAAGGAAAATGACTCTGAAAATTGGCATGTGCAGATTTTCCGATCCATTGATTCAGGATCACTAAAGGGATTCCCCAAAACTGTCGACATCGCTAAGGCCCAGTTTGCAGTACTTAAAACAATTGTAGCTTGGACCATAAAGGAATTTTTCTGGTTGAATGCTGAGCACTTCTATTGTGGTGTTCGCTTGAGAGTTGAGACATTCAGATTTGGAGCTGATAATCTAATCCCAATGGAGTTGGCATTGAAAATTGCTAGTAAAATTAAAGCTAAGGAGAGATTTGCAGTTTATATTGTTATACCAATGTGGCCTGAGGGTGATCCTAATTCTATGACTATGCAAGAAATTCTCTTTTGGCAGTTTCAGACAATTCAAATGATGTATGGTGTTGTTGCAATGGAGCTTAAATCCGCCCAGATTCCGGATGCTCACCCTCTAGACTATTTAAATTTCTATTGCCTTGGTAATCGGGAGAAATTGCCAAGCGAGGCTCTTCAATCATCTACAGATGCTACTAAGGTTACGAATTCATGGAAGTTCCAGAGGTTCATGATTTATGTGCATGCTAAGGGAATGGTTGTGGATGATGAGTATGTAATAATAGGATCTGCCAACATTAATCAAAGATCTATGGCTGGTACCAAAGACACAGAGATAGCTATGGGTTCCTATCAGCCCCATCATACTTGGGCTGAGAAAAAGCAACACCCACACGGCCAGATATACGGATACAGAATGTCGCTTTGGGCTGAGCACCTTGGTACAACAGAGAAGTGCTTCAAGGAGCCAGAAACTCTGGATTGCGTAAGGAGAGTAAATGACGTGGCTAAAGATAATTGGTCCAGATATACGGCGGATGAGTGTATGCCGTTACAGGGTCATCTTCTCAAGTATCCGATAGAGGTGAACGTTGAGGGTAAAGTGGGTCCCTTGCCTGGTCACGAGAATTTCCCAGACGTTGGAGGTAAAGTGCTTGGAGCTCATTCTAATACTATTCCTGATATTCTAACAACATAA

Network for GWHGAAZE014973

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00168.31	C2	16	149	5.30E-24
PF00614.23	PLDc	316	349	1.40E-06
PF00614.23	PLDc	652	678	8.20E-08
PF12357.9	PLD_C	725	795	1.00E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01115	PLD1_2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerophospholipid metabolism	map00564
		Ether lipid metabolism	map00565
		Ras signaling pathway	map04014
		Phospholipase D signaling pathway	map04072
		Sphingolipid signaling pathway	map04071
		cAMP signaling pathway	map04024
		Endocytosis	map04144
		Fc gamma R-mediated phagocytosis	map04666
		GnRH signaling pathway	map04912
		Parathyroid hormone synthesis, secretion and action	map04928
		Glutamatergic synapse	map04724

Gene Ontology

GO term	Ontology	Name
GO:0046470	biological_process	phosphatidylcholine metabolic process
GO:0016020	cellular_component	membrane
GO:0003824	molecular_function	catalytic activity
GO:0004630	molecular_function	phospholipase D activity
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	84.872
	SRR3591706	second leaf	34.141
	SRR3591707	mature leaf	22.721
	SRR3591708	Shoot apex	49.688
	SRR3591709	Stem	90.951
	SRR3591710	White floral bud	77.998
	SRR3591711	White flower	46.576
	SRR3591712	Green floral bud	48.994
	SRR3591713	Yellow flower	26.726
SRP173429	SRR8316895	Juvenile bud stage	28.982
	SRR8316896	Juvenile bud stage	43.844
	SRR8316897	Juvenile bud stage	17.950
	SRR8316894	Third green stage	18.846
	SRR8316900	Third green stage	54.557
	SRR8316901	Third green stage	54.535
	SRR8316898	Complete white stage	27.537
	SRR8316899	Complete white stage	82.229
	SRR8316903	Complete white stage	50.747
	SRR8316902	Silver flowering stage	26.447
	SRR8316904	Silver flowering stage	35.532
	SRR8316905	Silver flowering stage	18.456
	SRR8316906	Gold flowering stage	68.250
	SRR8316907	Gold flowering stage	56.153
	SRR8316908	Gold flowering stage	58.018
SRP132670	SRR6706286	Control	50.036
	SRR6706287	Light intensity 50%	52.148
	SRR6706288	Light intensity 20%	56.376
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.713
	CNS0095593	Slightly white alabastrum(diploid) 2	34.275
	CNS0095594	Slightly white alabastrum(diploid) 3	28.099
	CNS0095595	Whole white alabastrum(diploid) 2	26.431
	CNS0095596	Whole white alabastrum(diploid) 3	20.272
	CNS0095597	Whole white alabastrum(diploid) 4	27.198
	CNS0095598	Silvery flower (diploied) 1	44.705
	CNS0095599	Silvery flower (diploied) 2	34.557
	CNS0095600	Silvery flower (diploied) 3	55.536
	CNS0095601	Golden flower (diploid) 1	46.236
	CNS0095602	Golden flower (diploid) 2	51.111
	CNS0095603	Golden flower (diploid) 3	51.018
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.244
	CNS0095605	Slightly white alabastrum(tetraploid) 2	30.382
	CNS0095606	Slightly white alabastrum(tetraploid) 3	74.615
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.100
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.996
	CNS0095609	Whole white alabastrum(tetraploid) 3	48.643
	CNS0095610	Silvery flower (tetraploid) 1	42.195
	CNS0095611	Silvery flower (tetraploid) 2	56.503
	CNS0095612	Silvery flower (tetraploid) 3	42.126
	CNS0095613	Golden flower (tetraploid) 1	20.349
	CNS0095614	Golden flower (tetraploid) 2	32.389
	CNS0095615	Golden flower (tetraploid) 3	50.804
CRA001975	CRR073297	Stem 1	65.852
	CRR073298	Stem 2	59.726
	CRR073299	Stem 3	52.828
	CRR073300	Leaf 1	82.266
	CRR073301	Leaf 2	71.981
	CRR073302	Leaf 3	50.785
	CRR073303	Juvenile bud 1	62.851
	CRR073304	Juvenile bud 2	62.230
	CRR073305	Juvenile bud 3	84.235
	CRR073306	Third green 1	43.366
	CRR073307	Third green 2	28.615
	CRR073308	Third green 3	37.640
	CRR073309	Second white 1	29.724
	CRR073310	Second white 2	30.385
	CRR073311	Second white 3	32.425
	CRR073312	Silver flowering 1	25.623
	CRR073313	Silver flowering 2	20.639
	CRR073314	Silver flowering 3	18.468
	CRR073315	Gold flowering 1	22.361
	CRR073316	Gold flowering 2	36.525
	CRR073317	Gold flowering 3	23.279
	CRR073318	Tawny withering 1	45.937
	CRR073319	Tawny withering 2	39.901
	CRR073320	Tawny withering 3	47.785