Gene detail

Detail information of GWHGAAZE014972

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011099129.1	PREDICTED: DNA-directed RNA polymerase II subunit 1 [Sesamum indicum]
Swissprot	tr\|P18616\|NRPB1_ARATH	DNA-directed RNA polymerase II subunit 1
trEMBL	tr\|K4BAK3\|K4BAK3_SOLLC	DNA-directed RNA polymerase {ECO:0000256\|RuleBase:RU004279}
TAIR10	AT4G35800.1	RNA polymerase II large subunit

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	22600203	22608632	+
GWHAAZE00000004	mRNA	22600203	22608632	+
GWHAAZE00000004	exon	22600203	22600258	+
GWHAAZE00000004	exon	22600408	22600447	+
GWHAAZE00000004	exon	22601680	22601979	+
GWHAAZE00000004	exon	22602802	22602936	+
GWHAAZE00000004	exon	22603418	22603579	+
GWHAAZE00000004	exon	22603660	22603874	+
GWHAAZE00000004	exon	22604144	22604228	+
GWHAAZE00000004	exon	22604371	22604706	+
GWHAAZE00000004	exon	22604797	22605068	+
GWHAAZE00000004	exon	22605673	22605931	+
GWHAAZE00000004	exon	22606026	22608632	+
GWHAAZE00000004	CDS	22600203	22600258	+
GWHAAZE00000004	CDS	22600408	22600447	+
GWHAAZE00000004	CDS	22601680	22601979	+
GWHAAZE00000004	CDS	22602802	22602936	+
GWHAAZE00000004	CDS	22603418	22603579	+
GWHAAZE00000004	CDS	22603660	22603874	+
GWHAAZE00000004	CDS	22604144	22604228	+
GWHAAZE00000004	CDS	22604371	22604706	+
GWHAAZE00000004	CDS	22604797	22605068	+
GWHAAZE00000004	CDS	22605673	22605931	+
GWHAAZE00000004	CDS	22606026	22608632	+

Transcript Sequence
>GWHTAAZE014986 ATGCCTAGAATCAAGCCTATCAAATCTAGGTGGTCTGAAGTTTATGAACTCTCAAGGACTACAGCATGTCCACAAATGGCTCACAAGGGGTCAATGGAAAAACCCCAGTTCAAGGAAGCATTGAGAATACAAAATCCTAAAAGTAGGCTCAAAAAGATTTCAGAAGCCTGCAAAAATAGGACAAGATGTGAAGGAGTTGACGCAAAGGAGGTCAATGGGCAAGATTCTGAAGAACCAGCAAAAAGGATTCGGGTTGGTTGTGGTGCTCAGCAGCCCAAACTTACTATTGAAGGCATGAATATGGTTGCTGAGTACAAGGCACAAAAGAAGAAGAATAATGATTTGGAGAAGATTCCTCAACCTGCTGAACAAAAAAAGCTGCTTTCTGCTGAAAACGTTCTTAACATTCTGAAGCGAATAAGTGATGAAGACTGCATGCTGTTAGGCTTGGACCCAAAACAAGCTCGTCCAGACTGGATGATTCTTCAAGTTCTTCCAGTACCTCCGCCTACAATGAGACCGTCTGTGGCAGATGACTTGACTCATCAGCTATCCATGATCATTAGGCTCAATAAGAATTTGAAGACCCAAGAAAAAAATGGGGCACCTCCACACATCATCACTGAGTTTGAACGGTTATTGCAGTTTTATATAGCTACATATTTTGACAACGAACAACCTGGACTGCCAAGGGCTACACAAAAATCAGGCAGGCCAATTAAATCAATATGCAGTAGGTTTAAGGAAAAGGAGGGAAGGATAGGTAACTTGGGAAAACAAGCGAATTTTTCAGCTTGGACTGTGATCACACCTGATCCGAATATTAACCTTGATGAACTGGGTGTTCCTCCCAGTATTGCCCGGAACCTCACATTTCCAGAAATTGTGACTCCAGACAATATCCAAAGGTTGGAGGAACTTGTTGAAAATGGAGCTGATCCTCCACCTGGTACAAAGGGCGCCAATTATATAATTACAAATGATGGAGAAAGGGTGGAGCGACACTTGATTGATGGAGACTATGTCCTTGTAAATCGGCAACCTAGTCTCCATAAAATGTCTATGATGGGGCATAAGATCAAGATCTTGCCACACTCAACTTTCCGCTTAAACCCGTCTGTTGCTTCAGCATATAATGCTAATTTTGATGGAGATGAAATGAACATGTATGTTCCCCAATCATTTGAAACTATAGCAGAAGTATCAGAACTGATGATGGTGCCTAAATGCATAGTGTCACCTCAGTCAAATCGCCCTGTAATGGGTATTGTCCAGGATACCCTTTTAGGATCCTACAAAATCACGCAAAGGGATTCGTTTATTGAGAAGGATGTATTCATGAACATGTTGATGTTGTGTGAGGATGTTGATGGAAGAATACCTCCCCCAGCAATTTTAAAGCCCAGGCCTCTTTGGACTGGAAAACAAGTTTTCACTTTTATCATACCAAAACAGATAAATCTGTTAAGATATTCATCTGAAAAAGGATATATAACACGAGGAGACACTCAAGTTCAAATAGAAAAAGGGGAGCTCCTTTCTGGAACCCTATGCAAGAAGACTCTTGGGACGTCCACTGGAAGTCTTATACATGTCATCTGGCAAGATGTTGGTCCAGATGCAGCTCACAAATTTTTGATACATACGCAGTGGCTTGTTAACTACTGGCTTTTGCAGAATGGTTTTAGCATTGGGATTGGAGATACAATTGCTGATGCTGCAACCATGGAAATAATTAATAATACTATTTCTAATGCAAAAGATAAAGTTAAAGAACTCATAACTGCTGCCCAAGGTAACAGGTTGGAGGCTGAACCAGGACAAACTATTGTGGAATCATTTGAAAATAGATTGATCAAGGTGTTGAACAAGGCTCGTGATGATGCTGGAAGTAGTGCCTGGAAGAGCTTATCTGAAACCAACAATCTTAAGGCAGTGGATACTGCAGGATCAAATGGAAGTAATATATCACAGATTACAGCTTGTGTGGGGCAGCAAAATGTTGAAGGCAAGCGGATCCCTTATGGGTTCCTAGATCGGACATTGCCCCATTTCAGCAAGTATGATTATGGTCCAGAAAGTCGTGGTTTTGTGGAGAACTCGTATTTTGGTGGTTTGACCCCTCAAGAGTTCTTCTTTCATGCAATGGGTGCTAGAGAAGGTCTTATGGATACTGCAGTGAAGACTTGTACAACCGAGTACCTCCAGAGACAACTGATGAGGGGTATGGAGGATATCATGGTTAAATACGATGGGACTGTGAGGAATTCACTGGGAGATGTGATTCAGTTTATCTATGGGGAAGATGGTATGGATGCTACTAGGATAGAATCACAGAATCTGGACTCTTTGAAATTGAAGAAATCGGAGTTTGACGAGACTTATAGATATGAGATCGATGATCCAAACTGGAACCCAACGTACTTGTTGCCAAAATATGTTGAAGATTTAAAAACCACCAAAGAATTGCAAAATGTACTTGATGCTGAAGTACAAAAACTCGAAGCCAATAGGAACATCCTTGGAATGGAGATTGCAACGAAGGGTGATAAATCTTGGGCACTGCCTGTTAACATCATTAGGCTTATCTCAAATGCGCAAAAGACCTTTAGGGTTGACTTTAGACAATCCTCCGATATGCGCCCGACAGAGATCGTGGAAGCTGTTGATAAGCTTCAAGAAAGGCTTAAGGTTGTTAATGGTGATGAATCGGTAAGTTTGGAAGCTCAAAAGAATGCCACCCTCTTGTTCAATATATTGCTTCGAAGCACATTGGCCAGTAAAAGTGTCTTGAATGAATACATACTTACTCGTGAAGCATTTGAGTGGGTTATTGGTGAGATCGAATCACGGTTCTTACAATCACTTGTAGTTCCAGGGGAAATGGTTGGTTGTTTTGCTGCCCAATCTATTGGTGAGCCTAATATGTTTTACTATGCTGGTGTGAGTGCGAAGAATGTCATTCTAGGTGTTCCAAGATTGAAGGAGATAATTAATGTAGCAAATAAAATAAAAAACCCCTCTATTTCTGTATATTTGATGCCTGAAGTGGGTCAGACGAGGGAAACAGCCAAGAATGTCCAATGTGCTTTGGAATACACTACTCTTCGAAGTGTTACAGAAGCTACAGAGGTATGGTATGATCCAGATCCCATGAGCACCATAATCGAGGAAGATATTGACTTTGTCAAGTCCTATTATGAAAGGTCCAATGGAAAGATTGACCCTGCAAAGATCTCTCCCTGGTTGCTTCGCATAGAGTTAAATCAGGAAATGATGATCGATAAGAGGCTAAGCATGGCCAACATTGCTGAGAAGATCAATCTTGCATTTGATGATGATCTAAACTGCATATTTAGTGAGGATTATGCTCAAAAGCTGATCCTCCATGTTCGTATAATGAATGATGAAGCTCTGAAGGCAGAATTAAATGATGATTCTTTTGAGGATAATGTTCTCCTCATGAAGATTGCAAGTAACATACTAACAGAAATGTGTCTTCGAGGCATTCAAGGGATCAGCAACGCATTAATTAAAAACATTGCGGTAGAAAAATATACTGATGACGAAGGATTCGAGGTCAAAAGCCAGTGGATGCTAGTTACAGAAGGTGTCAATCTTTTAGCTGTTATGTGTCTTGAAGATGTCGATGCAACAAGGACAACAAGTAATCATTTGATAGAAGTTGTTGAAGTCCTTGGAATCGAGGCGGTTCGCCGGTCCTTGCTGGACGAGTTGCGCACAGTCATATCTTTCTATGGATCTTACGTAAATTACTGGCATTTTGCTATCATCTGTGACGCAATGACCTACCGAGGTCATTTAACGGCTATTAATCTGAATGATACTGGGTACATTATGAGATGCTCGTTTGAAGAAACTGCATACATTCTTTCTGATGCTGCTGCATTTGCAGAAACAGATTACTTGAGGGGCATTGATGAACATATAATGTTGGGTCAGCTTCCACATATTGGCACAGGATACGCTGCCCTTCATCTGAATGAGGAGATGTTGAAAGAAGCTACTGAAGTACCTGGTTATATGGATGATGAACTGGAAATCATCAAGGCACCACCACCACCAACACAAAAACGAAAACGAAAAACTCCATATAATGAGACCTTGATGTCCCCAAGCGCTTTGCTGAGCCTGAGGCCCAATCTCGCTTTGCCACGTGGTTACACCCTGATTTCCCCGAAATACAGTCCTAGCTCTTCTGGTTATAAGCCCACTTCCCCAACTTATAATCGTAGCTTCACTGGTCACACCCCTACTTTTCCCACTTGCAATCTAACCTCACGAAGTATCCTTGGCACCCCTGGTTACAGCCCCTTGTATAGATACTTTCCGATATGTCCCCTTTACAATCCCTCAGTGGTGCGTTCACCGAGAGGTCTGAGGCCATCACGTCCTGGTGCACCCAGTCCTTCCTTTCGAAGCTACAGGCAAGTGTTCAATCCCTAG

Network for GWHGAAZE014972

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04997.13	RNA_pol_Rpb1_1	36	254	7.10E-54
PF00623.21	RNA_pol_Rpb1_2	258	407	9.50E-54
PF04983.19	RNA_pol_Rpb1_3	411	569	3.00E-50
PF05000.18	RNA_pol_Rpb1_4	596	698	2.10E-27
PF04998.18	RNA_pol_Rpb1_5	705	1284	5.80E-79
PF04992.15	RNA_pol_Rpb1_6	771	955	3.20E-62
PF04990.13	RNA_pol_Rpb1_7	1034	1168	3.20E-43

Protein Sequence

>GWHPAAZE014979
MPRIKPIKSRWSEVYELSRTTACPQMAHKGSMEKPQFKEALRIQNPKSRLKKISEACKNRTRCEGVDAKEVNGQDSEEPAKRIRVGCGAQQPKLTIEGMNMVAEYKAQKKKNNDLEKIPQPAEQKKLLSAENVLNILKRISDEDCMLLGLDPKQARPDWMILQVLPVPPPTMRPSVADDLTHQLSMIIRLNKNLKTQEKNGAPPHIITEFERLLQFYIATYFDNEQPGLPRATQKSGRPIKSICSRFKEKEGRIGNLGKQANFSAWTVITPDPNINLDELGVPPSIARNLTFPEIVTPDNIQRLEELVENGADPPPGTKGANYIITNDGERVERHLIDGDYVLVNRQPSLHKMSMMGHKIKILPHSTFRLNPSVASAYNANFDGDEMNMYVPQSFETIAEVSELMMVPKCIVSPQSNRPVMGIVQDTLLGSYKITQRDSFIEKDVFMNMLMLCEDVDGRIPPPAILKPRPLWTGKQVFTFIIPKQINLLRYSSEKGYITRGDTQVQIEKGELLSGTLCKKTLGTSTGSLIHVIWQDVGPDAAHKFLIHTQWLVNYWLLQNGFSIGIGDTIADAATMEIINNTISNAKDKVKELITAAQGNRLEAEPGQTIVESFENRLIKVLNKARDDAGSSAWKSLSETNNLKAVDTAGSNGSNISQITACVGQQNVEGKRIPYGFLDRTLPHFSKYDYGPESRGFVENSYFGGLTPQEFFFHAMGAREGLMDTAVKTCTTEYLQRQLMRGMEDIMVKYDGTVRNSLGDVIQFIYGEDGMDATRIESQNLDSLKLKKSEFDETYRYEIDDPNWNPTYLLPKYVEDLKTTKELQNVLDAEVQKLEANRNILGMEIATKGDKSWALPVNIIRLISNAQKTFRVDFRQSSDMRPTEIVEAVDKLQERLKVVNGDESVSLEAQKNATLLFNILLRSTLASKSVLNEYILTREAFEWVIGEIESRFLQSLVVPGEMVGCFAAQSIGEPNMFYYAGVSAKNVILGVPRLKEIINVANKIKNPSISVYLMPEVGQTRETAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDIDFVKSYYERSNGKIDPAKISPWLLRIELNQEMMIDKRLSMANIAEKINLAFDDDLNCIFSEDYAQKLILHVRIMNDEALKAELNDDSFEDNVLLMKIASNILTEMCLRGIQGISNALIKNIAVEKYTDDEGFEVKSQWMLVTEGVNLLAVMCLEDVDATRTTSNHLIEVVEVLGIEAVRRSLLDELRTVISFYGSYVNYWHFAIICDAMTYRGHLTAINLNDTGYIMRCSFEETAYILSDAAAFAETDYLRGIDEHIMLGQLPHIGTGYAALHLNEEMLKEATEVPGYMDDELEIIKAPPPPTQKRKRKTPYNETLMSPSALLSLRPNLALPRGYTLISPKYSPSSSGYKPTSPTYNRSFTGHTPTFPTCNLTSRSILGTPGYSPLYRYFPICPLYNPSVVRSPRGLRPSRPGAPSPSFRSYRQVFNP

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03006	RPB1, POLR2A	RNA polymerase	map03020

Gene Ontology

GO term	Ontology	Name
GO:0006351	biological_process	transcription, DNA-templated
GO:0003677	molecular_function	DNA binding
GO:0003899	molecular_function	DNA-directed 5'-3' RNA polymerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.644
	SRR3591706	second leaf	0.256
	SRR3591707	mature leaf	0.309
	SRR3591708	Shoot apex	1.544
	SRR3591709	Stem	0.392
	SRR3591710	White floral bud	0.097
	SRR3591711	White flower	0.028
	SRR3591712	Green floral bud	0.049
	SRR3591713	Yellow flower	0.051
SRP173429	SRR8316895	Juvenile bud stage	0.140
	SRR8316896	Juvenile bud stage	0.193
	SRR8316897	Juvenile bud stage	0.053
	SRR8316894	Third green stage	0.059
	SRR8316900	Third green stage	0.062
	SRR8316901	Third green stage	0.015
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.076
	SRR8316905	Silver flowering stage	0.008
	SRR8316906	Gold flowering stage	0.050
	SRR8316907	Gold flowering stage	0.029
	SRR8316908	Gold flowering stage	0.023
SRP132670	SRR6706286	Control	0.006
	SRR6706287	Light intensity 50%	0.006
	SRR6706288	Light intensity 20%	0.014
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.020
	CNS0095593	Slightly white alabastrum(diploid) 2	0.065
	CNS0095594	Slightly white alabastrum(diploid) 3	0.031
	CNS0095595	Whole white alabastrum(diploid) 2	0.012
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.072
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.033
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.078
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.057
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.012
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.045
	CNS0095610	Silvery flower (tetraploid) 1	0.001
	CNS0095611	Silvery flower (tetraploid) 2	0.001
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.017
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.096
	CRR073299	Stem 3	0.011
	CRR073300	Leaf 1	0.040
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.014
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.002
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.035
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.156
	CRR073319	Tawny withering 2	0.033
	CRR073320	Tawny withering 3	0.009