Gene detail

Detail information of GWHGAAZE014969

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010646648.1	0	PREDICTED: protein kinase APK1B, chloroplastic-like [Vitis vinifera]
Swissprot	tr\|Q9SR05\|ANX1_ARATH	2E-59	Receptor-like protein kinase ANXUR1 (Precursor)
trEMBL	tr\|A0A061DGF7\|A0A061DGF7_THECC	0	Receptor-like protein kinase THESEUS 1 {ECO:0000313\|EMBL:EOX90756.1}
TAIR10	AT3G04690.1	2E-54	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	22519752	22522779	-
GWHAAZE00000004	mRNA	22519752	22522779	-
GWHAAZE00000004	exon	22519752	22520258	-
GWHAAZE00000004	exon	22520622	22520944	-
GWHAAZE00000004	exon	22521234	22521302	-
GWHAAZE00000004	exon	22521819	22521901	-
GWHAAZE00000004	exon	22522062	22522242	-
GWHAAZE00000004	exon	22522584	22522779	-
GWHAAZE00000004	CDS	22522584	22522779	-
GWHAAZE00000004	CDS	22522062	22522242	-
GWHAAZE00000004	CDS	22521819	22521901	-
GWHAAZE00000004	CDS	22521234	22521302	-
GWHAAZE00000004	CDS	22520622	22520944	-
GWHAAZE00000004	CDS	22519752	22520258	-

Transcript Sequence
>GWHTAAZE014983 ATGGCTAATAGAGAAGTAGCTTCACCATCTATAGCACCTGAGTCAGGGCAAAATGAGAGTTCATTTCTTAAGAATAAATTTCTATGGGGAGGCCTCGTTATTTTCAGCTTTGTAGCATTTGTGGGTGCTTTGGTGTATTTCTGTATGAAGAGGAAGGTATTTGCGACTTCCAAGCACGGTTTGAAGAAGAAAAAAGAATTAGATGATTTGGATGCCGAGAAAATGATGTTGAGACGGTTCCAGTTGGAAGAACTAGAGAAGGCCACCAACAACTTCAGCCGAGATTGCTTGATTGGTTCTGGCGCATTTGGAAATGTCTACATTGGAACAGTTGATGCAGAGGGTACACTTGCAGTCAAGAAAGCTCGTGCTGACTCTTATGTTGAAACAGAGGTGAAGTTACTTTCAAAAGTCAAGCATAGGAATCTTGTAGGCCTAGTGGGATACTGTGAAGAAACTGGGCCAAAAGGAGCACAAATATTGGTTTATGAATATATCTCTAATGGTTCACTTCTTGATTACATTGTGGGCATAGCTCATTTGCATGAAGGAATTAAGCCGAGCATAATTCACCGGGATATTAAACCGAGTAACATTCTAGTAGGAGAAGGATTTGAGGCCAAGGTTTCGGATTTCGGGCTCGTAAAATCAGGTCCAGTCGATGACCAGTCGCACGTTAGTAGCCAGGTCAAAGGGACCCCAGGATACCTTGACCCTGCCTATTGTTCGAGCTTCCACTTGAGTCCATTTAGTGATGTTTATAGCTTCGGAGTCATACTTCTGCAACTTGTTGCTGCTCGGCCTGCAGTTGATACTACTAGAAGCGGCTCTAATTATCATATCATCGAATGGGCAAGGCCGAGCCTAGAGCGGGGCCGAGTCGAAGATATACTAGACACGAATCTTCTACTAGAGCAATGCAACATGGATGTAATGCTAAAAATGGGACAATTGGGCCTAAGATGTGTGGTAAAAGTGCCAAAACAAAGGCCTACAATGACCCAAGTATGGCAAGAGTTGGAGGCAGCCCTCCATTCATCGGGCTCGTCCATCCACAAGCCACCCACACAGGGTCCACGGAGATCAACAGGCACAACTTGCCGGGTGGGGGATAACGGGGCCCGTGAGTACATGACAGACTGCGATTTTTCGCAGAGCTCGGTTAGCATAGATGGTGTTGGGCTTCAAAGGTTTCACGTGGAAATGGATGATAGTCTCTCGTTTAAGAGCACGAGTTTGAGGTGTTTCGAGAGTGATACTATATGCATTGATGTTGATATGGTTAACAAGAATTTGAGAGGGATTAGTGAGGAAACCAGTGCTGGTTTTGATCATGATTTCAGCATAGCTCGCGATTAG

Network for GWHGAAZE014969

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	96	338	5.90E-28

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_L-LEC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.200
	SRR3591706	second leaf	0.050
	SRR3591707	mature leaf	0.190
	SRR3591708	Shoot apex	0.274
	SRR3591709	Stem	0.774
	SRR3591710	White floral bud	0.192
	SRR3591711	White flower	0.673
	SRR3591712	Green floral bud	0.097
	SRR3591713	Yellow flower	0.170
SRP173429	SRR8316895	Juvenile bud stage	0.062
	SRR8316896	Juvenile bud stage	0.089
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.016
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.151
	SRR8316902	Silver flowering stage	1.232
	SRR8316904	Silver flowering stage	1.345
	SRR8316905	Silver flowering stage	0.328
	SRR8316906	Gold flowering stage	0.992
	SRR8316907	Gold flowering stage	1.521
	SRR8316908	Gold flowering stage	1.200
SRP132670	SRR6706286	Control	0.030
	SRR6706287	Light intensity 50%	0.036
	SRR6706288	Light intensity 20%	0.061
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.032
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.254
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.051
	CNS0095599	Silvery flower (diploied) 2	0.175
	CNS0095600	Silvery flower (diploied) 3	0.140
	CNS0095601	Golden flower (diploid) 1	0.197
	CNS0095602	Golden flower (diploid) 2	0.103
	CNS0095603	Golden flower (diploid) 3	0.027
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.040
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.158
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.339
	CNS0095611	Silvery flower (tetraploid) 2	0.101
	CNS0095612	Silvery flower (tetraploid) 3	0.789
	CNS0095613	Golden flower (tetraploid) 1	0.083
	CNS0095614	Golden flower (tetraploid) 2	0.192
	CNS0095615	Golden flower (tetraploid) 3	0.044
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.049
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.072
	CRR073301	Leaf 2	0.179
	CRR073302	Leaf 3	0.132
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.334
	CRR073307	Third green 2	0.104
	CRR073308	Third green 3	0.779
	CRR073309	Second white 1	0.152
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.042
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.639
	CRR073319	Tawny withering 2	0.548
	CRR073320	Tawny withering 3	0.447