Detail information of GWHGAAZE014957


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP01866.12.6767E-102unnamed protein product [Coffea canephora]
Swissprottr|Q94F47|UBC28_ARATH3E-99Ubiquitin-conjugating enzyme E2 28
trEMBLtr|A0A068U034|A0A068U034_COFCA1E-102Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313|EMBL:CDP01866.1}
TAIR10AT1G64230.26E-78ubiquitin-conjugating enzyme 28

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene2225909422260192+
GWHAAZE00000004mRNA2225909422260192+
GWHAAZE00000004exon2225909422259163+
GWHAAZE00000004exon2225940922259536+
GWHAAZE00000004exon2225982622259930+
GWHAAZE00000004exon2226004922260192+
GWHAAZE00000004CDS2225909422259163+
GWHAAZE00000004CDS2225940922259536+
GWHAAZE00000004CDS2225982622259930+
GWHAAZE00000004CDS2226004922260192+
Transcript Sequence

Network for GWHGAAZE014957

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.27UQ_con51411.10E-53
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
K06689UBE2D, UBC4, UBC5 Protein processing in endoplasmic reticulum map04141
Ubiquitin mediated proteolysismap04120
MAPK signaling pathway - flymap04013
Toll and Imd signaling pathwaymap04624

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf99.342
SRR3591706second leaf37.031
SRR3591707mature leaf158.362
SRR3591708Shoot apex18.443
SRR3591709Stem304.327
SRR3591710White floral bud146.910
SRR3591711White flower181.732
SRR3591712Green floral bud99.697
SRR3591713Yellow flower33.654
SRP173429 SRR8316895Juvenile bud stage 22.609
SRR8316896Juvenile bud stage 24.174
SRR8316897Juvenile bud stage 16.224
SRR8316894Third green stage 18.221
SRR8316900Third green stage 52.943
SRR8316901Third green stage 51.769
SRR8316898Complete white stage 35.848
SRR8316899Complete white stage 172.263
SRR8316903Complete white stage 76.311
SRR8316902Silver flowering stage45.004
SRR8316904Silver flowering stage52.247
SRR8316905Silver flowering stage18.716
SRR8316906Gold flowering stage 111.582
SRR8316907Gold flowering stage 76.815
SRR8316908Gold flowering stage 81.804
SRP132670SRR6706286Control127.134
SRR6706287Light intensity 50%95.587
SRR6706288Light intensity 20%93.348
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1123.544
CNS0095593Slightly white alabastrum(diploid) 2132.022
CNS0095594Slightly white alabastrum(diploid) 399.774
CNS0095595Whole white alabastrum(diploid) 2147.335
CNS0095596Whole white alabastrum(diploid) 366.143
CNS0095597Whole white alabastrum(diploid) 4125.935
CNS0095598Silvery flower (diploied) 1120.665
CNS0095599Silvery flower (diploied) 2176.612
CNS0095600Silvery flower (diploied) 3103.058
CNS0095601Golden flower (diploid) 178.714
CNS0095602Golden flower (diploid) 280.670
CNS0095603Golden flower (diploid) 384.398
CNS0095604Slightly white alabastrum(tetraploid) 169.625
CNS0095605Slightly white alabastrum(tetraploid) 284.216
CNS0095606Slightly white alabastrum(tetraploid) 364.220
CNS0095607Whole white alabastrum(tetraploid) 1119.152
CNS0095608Whole white alabastrum(tetraploid) 2109.469
CNS0095609Whole white alabastrum(tetraploid) 322.523
CNS0095610Silvery flower (tetraploid) 171.870
CNS0095611Silvery flower (tetraploid) 232.597
CNS0095612Silvery flower (tetraploid) 331.358
CNS0095613Golden flower (tetraploid) 172.076
CNS0095614Golden flower (tetraploid) 260.861
CNS0095615Golden flower (tetraploid) 341.874
CRA001975CRR073297Stem 115.920
CRR073298Stem 217.925
CRR073299Stem 318.639
CRR073300Leaf 137.955
CRR073301Leaf 249.272
CRR073302Leaf 337.576
CRR073303Juvenile bud 176.851
CRR073304Juvenile bud 241.841
CRR073305Juvenile bud 368.340
CRR073306Third green 123.400
CRR073307Third green 243.557
CRR073308Third green 339.073
CRR073309Second white 117.822
CRR073310Second white 212.347
CRR073311Second white 34.171
CRR073312Silver flowering 16.653
CRR073313Silver flowering 20.939
CRR073314Silver flowering 31.311
CRR073315Gold flowering 135.356
CRR073316Gold flowering 257.234
CRR073317Gold flowering 326.237
CRR073318Tawny withering 194.754
CRR073319Tawny withering 2137.125
CRR073320Tawny withering 3127.874