Gene detail

Detail information of GWHGAAZE014951

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP01876.1	0	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068U042\|A0A068U042_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313\|EMBL:CDP01876.1}
TAIR10	AT2G17840.1	3E-153	Senescence/dehydration-associated protein-related

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	22173324	22176576	+
GWHAAZE00000004	mRNA	22173324	22176576	+
GWHAAZE00000004	exon	22173324	22174282	+
GWHAAZE00000004	exon	22174566	22174732	+
GWHAAZE00000004	exon	22175340	22175424	+
GWHAAZE00000004	exon	22176204	22176576	+
GWHAAZE00000004	CDS	22173324	22174282	+
GWHAAZE00000004	CDS	22174566	22174732	+
GWHAAZE00000004	CDS	22175340	22175424	+
GWHAAZE00000004	CDS	22176204	22176393	+
GWHAAZE00000004	three_prime_UTR	22176394	22176576	+

Transcript Sequence
>GWHTAAZE014965 ATGGCATCCCAAAACCCTAACCCTAGAACCCCAAAAACATACCCCCATGTAATCGTCCACAATCCAGACGACTCCTCCAAATCCTTCTCCCAAATCTTCGGCAACCACAAATCCTTCTCCCATTCCTCCATGTACCCTACCATAGACAAACAAGACCTCTTCCCAAACAAAGACGATAACCTTTATTCCCCCTCCGCCCCTCCCATCTCCCTCGAAGAGATCATCCTCACCGTCCCAGGTGCCATCCTCCACCTCATCGACAAGCACTATTCCATCGAGCTTGCCTGCGGCGATCTCTCCATAATCCGCCTTCGCCAGGGCGAAAATACCGTCGCCATCCTCGCAAGCGTGGCGGATGAGATCCGGTGGCCCCTTGCGAAAGACGAGGCCGCCGTGAAACTCGACACCTCGCATTACTTCTTCACGATCCGTGCACCAAAGGAGAGTGGATCGGACTCGAGCGATGACGATGAACCGGCGAAAGGAACTAAAATTAAATCTGGATCTGCCAAGGATTCGGATTTGTTGTTGAATTACGGACTGACTATTGCCTCGAAGGGGCAAGATAAATTGTTGAAGGAACTGGATGGGATTTTGGAGATTTATAGTGGTTTTTCGGTACAGAAGGTGGACGGGAAAGGGGAGGGGAAGGAGTCGGAGGTTTTGGATGGATCGGTGGCAAAGGAGTTCTCTCCAGCGGATTTGAAGTCGGAGAAGAAGGAGGTGATGGAGGATCGGTGTCGAGCTTATTGGACGACGTTGGCCCCTAACGTGGAAGATTATAGTGGGCTTGCGGCGAAGTTGATAGCTGCGGGGTCGGGGCAGCTAGTTAAGGGGATTTTGTGGTGTGGTGATGTTACAATGGATAGGTTGAAATGGGGGAATGAGGTTCTTAAGAACAGGATGGATCCGGCTGAAAAATCGAAGATCAGCCCTGATACCATGAAGAGAATTCAAAGGGTTAAGAAGGTTACAAAGATGACGGAAAAAGTAGCAACAGGAGTCCTCTCTGGGGTTGTTAAGGTTTCTGGTTTCTTCACAAGTTCAGTTGCAAACTCTAGAATGGGCAAGAAGTTCTTTGGCCTCTTGCCTGGGGAAGTCGTCCTTGCTTCCCTCGATGGTTTTAACAAGGTCTGTGATGCTGTTGAAATTGCTGGAAAGAATGTAATGTCGACCTCATCCACTGTGACGACTGGGCTTGTCAACCACAGGTATGGGGAAGAAGCAGCTAAGGCAGCAAGCGAAGGACTTGATGCTGCAGGGCATGCCGTAGGGACGGCATGGACTGTCTTTAAAATTAGAAAAGCAGTCGACCCAAAAAGTGTTTTAAAACCTAGTACTCTTGTCAAATCTGCTGCTAAAACTGCCGCTGCTGAAATGAAGGCAAAGAAGTCCAAGTAACGATTTATGGGCATACTAGTAATTTGGTTTCCTGGGTTCGTTGTCCACTGTAGGGACAGAATGGTTGTTTAGCCAATCTCCCTTCTTTTAATCCTTAACATGTTATGCTAAGAACCTAGGCTCTTAGGTATGTTGCTTTAGGCGAAAATGTTGGTTGGCAGCTGATTATTTTATTTCTGTTCA

Network for GWHGAAZE014951

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06911.13	Senescence	269	436	3.30E-47

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K19366	SPG20	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.192
	SRR3591706	second leaf	0.947
	SRR3591707	mature leaf	0.558
	SRR3591708	Shoot apex	1.122
	SRR3591709	Stem	0.685
	SRR3591710	White floral bud	13.414
	SRR3591711	White flower	4.605
	SRR3591712	Green floral bud	15.554
	SRR3591713	Yellow flower	2.626
SRP173429	SRR8316895	Juvenile bud stage	1.503
	SRR8316896	Juvenile bud stage	4.473
	SRR8316897	Juvenile bud stage	2.834
	SRR8316894	Third green stage	3.154
	SRR8316900	Third green stage	12.045
	SRR8316901	Third green stage	14.201
	SRR8316898	Complete white stage	1.297
	SRR8316899	Complete white stage	4.237
	SRR8316903	Complete white stage	2.507
	SRR8316902	Silver flowering stage	0.700
	SRR8316904	Silver flowering stage	0.746
	SRR8316905	Silver flowering stage	0.546
	SRR8316906	Gold flowering stage	0.820
	SRR8316907	Gold flowering stage	0.637
	SRR8316908	Gold flowering stage	0.512
SRP132670	SRR6706286	Control	8.463
	SRR6706287	Light intensity 50%	9.085
	SRR6706288	Light intensity 20%	9.375
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.646
	CNS0095593	Slightly white alabastrum(diploid) 2	6.194
	CNS0095594	Slightly white alabastrum(diploid) 3	6.582
	CNS0095595	Whole white alabastrum(diploid) 2	11.667
	CNS0095596	Whole white alabastrum(diploid) 3	9.104
	CNS0095597	Whole white alabastrum(diploid) 4	9.702
	CNS0095598	Silvery flower (diploied) 1	0.593
	CNS0095599	Silvery flower (diploied) 2	0.933
	CNS0095600	Silvery flower (diploied) 3	2.209
	CNS0095601	Golden flower (diploid) 1	0.423
	CNS0095602	Golden flower (diploid) 2	1.265
	CNS0095603	Golden flower (diploid) 3	0.712
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.073
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.393
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.474
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.660
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.333
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.540
	CNS0095610	Silvery flower (tetraploid) 1	5.872
	CNS0095611	Silvery flower (tetraploid) 2	5.239
	CNS0095612	Silvery flower (tetraploid) 3	5.811
	CNS0095613	Golden flower (tetraploid) 1	3.068
	CNS0095614	Golden flower (tetraploid) 2	3.961
	CNS0095615	Golden flower (tetraploid) 3	3.728
CRA001975	CRR073297	Stem 1	4.719
	CRR073298	Stem 2	4.572
	CRR073299	Stem 3	2.221
	CRR073300	Leaf 1	12.877
	CRR073301	Leaf 2	10.934
	CRR073302	Leaf 3	7.562
	CRR073303	Juvenile bud 1	9.277
	CRR073304	Juvenile bud 2	13.313
	CRR073305	Juvenile bud 3	4.626
	CRR073306	Third green 1	1.570
	CRR073307	Third green 2	1.541
	CRR073308	Third green 3	1.371
	CRR073309	Second white 1	0.718
	CRR073310	Second white 2	0.542
	CRR073311	Second white 3	0.219
	CRR073312	Silver flowering 1	1.079
	CRR073313	Silver flowering 2	1.216
	CRR073314	Silver flowering 3	1.486
	CRR073315	Gold flowering 1	1.027
	CRR073316	Gold flowering 2	0.401
	CRR073317	Gold flowering 3	0.744
	CRR073318	Tawny withering 1	0.823
	CRR073319	Tawny withering 2	0.784
	CRR073320	Tawny withering 3	0.402