Gene detail

Detail information of GWHGAAZE014936

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011099853.1	PREDICTED: calcium-dependent protein kinase 28-like [Sesamum indicum]
Swissprot	tr\|Q7XJR9\|CDPKG_ARATH	Calcium-dependent protein kinase 16
trEMBL	tr\|M5VXE8\|M5VXE8_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ05771.1}
TAIR10	AT2G17890.1	calcium-dependent protein kinase 16

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	21875793	21879754	+
GWHAAZE00000004	mRNA	21875793	21879754	+
GWHAAZE00000004	exon	21875793	21876194	+
GWHAAZE00000004	exon	21876813	21876943	+
GWHAAZE00000004	exon	21877129	21877170	+
GWHAAZE00000004	exon	21877257	21877368	+
GWHAAZE00000004	exon	21877475	21877553	+
GWHAAZE00000004	exon	21877701	21877870	+
GWHAAZE00000004	exon	21877941	21878024	+
GWHAAZE00000004	exon	21878090	21878305	+
GWHAAZE00000004	exon	21878383	21878490	+
GWHAAZE00000004	exon	21878604	21878666	+
GWHAAZE00000004	exon	21878913	21879086	+
GWHAAZE00000004	exon	21879596	21879754	+
GWHAAZE00000004	CDS	21875793	21876194	+
GWHAAZE00000004	CDS	21876813	21876943	+
GWHAAZE00000004	CDS	21877129	21877170	+
GWHAAZE00000004	CDS	21877257	21877368	+
GWHAAZE00000004	CDS	21877475	21877553	+
GWHAAZE00000004	CDS	21877701	21877870	+
GWHAAZE00000004	CDS	21877941	21878024	+
GWHAAZE00000004	CDS	21878090	21878305	+
GWHAAZE00000004	CDS	21878383	21878490	+
GWHAAZE00000004	CDS	21878604	21878666	+
GWHAAZE00000004	CDS	21878913	21879086	+
GWHAAZE00000004	CDS	21879596	21879754	+

Transcript Sequence
>GWHTAAZE014950 ATGGGTAGTTGTTTTTCGACCACCAAGATCACCAGAGCAAATAGCAACACCCATTCCCCCACTACCACCACCGCCATTCAGAACAAGGTGCTGTCATTAACAACCACCACCATTTTTGCTAAGAAACAAAATCATGCGACCAATAATTATAAGGCCAAGGAGAGTCAGAAGAACCAACAGAACAAAAATTCTCAGAAGATTAGGCAGAACAAGACGAGTTCGAGGCGGCAAAGTGGGATGATTCCTTGTGGGAAGAGGACTGATTTTGGGTACCATAAGGATTTTGATAAGAATTATGCAATTGGGAAATTGTTGGGTCATGGCCAATTTGGGTATACATATGTTGCTACCGATAAGAAGAATGGCGATCGTGTTGCTGTCAAGAAAATTGACAAGAATAAGATGGTTCTTCCTATTGCAGTTGAGGATGTTAGGCGAGAAGTCAAGATATTGGAGGCTTTAAGCGGCCACGAAAATGTTGTTCAGTTCTACAATGCATTCGAGGACGAGTCTAATGTGTATATAGTTATGGAGTTATGTGAGGGTGGTGAACTGTTGGACCGAATTTTAGCCAAAAAAGACAGTCGTTATACCGAGAAAGATGCAGCAAGAGTTGTGCGGCAAATGCTAAAAGTCGCAGCTGAATGCCATTTACATGGTTTAGTACACCGTGACATGAAACCAGAGAATTTTCTTTTCAAGTCACCGAAAGAGGACTCGCCATTAAAGGCCACAGATTTTGGTCTGTCAGATTTTATAAGACCGGGGAGGAGGTTTTCAGATATTGTGGGAAGTGCCTATTACGTTGCTCCGGAAGTATTGAAACGCAAATCAGGGCCTGAGTCGGATGTGTGGAGTATTGGTGTAATTACTTACATTTTACTTTGTGGTCGGCGTCCCTTCTGGGATAAAACTGAGGACGGTATATTTAAAGAGGTTTTAAGAAACAAGCCCGATTTTCGCCGCAAGCCATGGCCAGGCATAAGCAACAGCGCCAAAGATTTCGTAAAGAAATTGCTGTTTTCCTTTTCATGTACTCAAAACCTTGTTTATAATATCTGTACAGTCTGCTTTCTATGTAGTACCCCTATCTGGGTCTTGATCCATTCAACTTTTGCAGCACACCCATGGGTTCGAGAAGGGGGAGACGCCTTGGAGATTCCTCTTGACATCTCTGTTCTATTCAATATGCGGCAGTTTGTGAAATACAGCCGATTGAAGCAGTTTGCTTTACGGGCATTGGCTAGCACACTAGATGAAGAGGTGCTGTCTGATCTTAAGGATCAATTTCATGCGATTGATGTGGATAAAAACGGCACTATTAGTCTTGAAGAAATGAGAGAGGCCCTTGCTAAAGATGTTCCGTGGAAATTGAAAGAATCACGTGTTTTGGAGATTCTTGAAGCGATCGACTCTAACACTGATGGGCTTGTGGATTTCCATGAGTTTGTGGCGGCAACTCTTCATGTTCATCAGTTGGAAGAACATAACTCGGAAAAGTGGCAGCAAGTATCACAGGCTGCTTTTGAAAAATTCGACGTAGATAGAGACGGATATATAACCCCCGAAGAACTTAAAATGCACACAGGCTTAAGAGGCTCGATAGACCCACTACTAGAGGAGGCTGATATCGACAAAGACGGGAAGATAAGTTTGTCGGAGTTCCGTAGGCTCCTAAGAACCGCAAGCATGGGCAACGTGTCTAGCCCCGTCTGCCATCGGGGTTCTCGGAGATTGTAG

Network for GWHGAAZE014936

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	99	340	2.40E-60
PF13499.7	EF-hand_7	424	487	8.20E-09
PF13499.7	EF-hand_7	506	559	5.10E-11

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
K13412	CPK	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.199
	SRR3591706	second leaf	25.899
	SRR3591707	mature leaf	26.307
	SRR3591708	Shoot apex	17.813
	SRR3591709	Stem	23.249
	SRR3591710	White floral bud	46.969
	SRR3591711	White flower	29.440
	SRR3591712	Green floral bud	23.465
	SRR3591713	Yellow flower	35.457
SRP173429	SRR8316895	Juvenile bud stage	11.349
	SRR8316896	Juvenile bud stage	18.668
	SRR8316897	Juvenile bud stage	9.581
	SRR8316894	Third green stage	9.599
	SRR8316900	Third green stage	22.906
	SRR8316901	Third green stage	22.676
	SRR8316898	Complete white stage	6.892
	SRR8316899	Complete white stage	28.524
	SRR8316903	Complete white stage	11.929
	SRR8316902	Silver flowering stage	13.405
	SRR8316904	Silver flowering stage	16.834
	SRR8316905	Silver flowering stage	9.217
	SRR8316906	Gold flowering stage	35.786
	SRR8316907	Gold flowering stage	29.203
	SRR8316908	Gold flowering stage	38.044
SRP132670	SRR6706286	Control	22.815
	SRR6706287	Light intensity 50%	26.372
	SRR6706288	Light intensity 20%	24.848
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.448
	CNS0095593	Slightly white alabastrum(diploid) 2	16.519
	CNS0095594	Slightly white alabastrum(diploid) 3	19.325
	CNS0095595	Whole white alabastrum(diploid) 2	23.086
	CNS0095596	Whole white alabastrum(diploid) 3	18.054
	CNS0095597	Whole white alabastrum(diploid) 4	30.256
	CNS0095598	Silvery flower (diploied) 1	23.956
	CNS0095599	Silvery flower (diploied) 2	23.106
	CNS0095600	Silvery flower (diploied) 3	28.277
	CNS0095601	Golden flower (diploid) 1	30.099
	CNS0095602	Golden flower (diploid) 2	30.030
	CNS0095603	Golden flower (diploid) 3	32.096
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.950
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.641
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.064
	CNS0095607	Whole white alabastrum(tetraploid) 1	28.435
	CNS0095608	Whole white alabastrum(tetraploid) 2	35.252
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.149
	CNS0095610	Silvery flower (tetraploid) 1	19.062
	CNS0095611	Silvery flower (tetraploid) 2	20.056
	CNS0095612	Silvery flower (tetraploid) 3	25.671
	CNS0095613	Golden flower (tetraploid) 1	14.330
	CNS0095614	Golden flower (tetraploid) 2	18.940
	CNS0095615	Golden flower (tetraploid) 3	26.118
CRA001975	CRR073297	Stem 1	21.113
	CRR073298	Stem 2	17.337
	CRR073299	Stem 3	13.288
	CRR073300	Leaf 1	25.822
	CRR073301	Leaf 2	22.274
	CRR073302	Leaf 3	12.095
	CRR073303	Juvenile bud 1	21.267
	CRR073304	Juvenile bud 2	11.515
	CRR073305	Juvenile bud 3	16.043
	CRR073306	Third green 1	13.348
	CRR073307	Third green 2	12.091
	CRR073308	Third green 3	12.249
	CRR073309	Second white 1	7.870
	CRR073310	Second white 2	13.391
	CRR073311	Second white 3	13.409
	CRR073312	Silver flowering 1	21.594
	CRR073313	Silver flowering 2	18.197
	CRR073314	Silver flowering 3	17.895
	CRR073315	Gold flowering 1	13.484
	CRR073316	Gold flowering 2	17.335
	CRR073317	Gold flowering 3	10.380
	CRR073318	Tawny withering 1	19.117
	CRR073319	Tawny withering 2	21.900
	CRR073320	Tawny withering 3	20.034