Gene detail

Detail information of GWHGAAZE014917

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010263896.1	PREDICTED: fructose-bisphosphate aldolase 1, chloroplastic [Nelumbo nucifera]
Swissprot	tr\|Q944G9\|ALFC2_ARATH	Probable fructose-bisphosphate aldolase 2, chloroplastic (Precursor)
trEMBL	tr\|M0ZU28\|M0ZU28_SOLTU	Fructose-bisphosphate aldolase {ECO:0000256\|RuleBase:RU003994}
TAIR10	AT4G38970.1	fructose-bisphosphate aldolase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	21560148	21564079	+
GWHAAZE00000004	mRNA	21560148	21564079	+
GWHAAZE00000004	exon	21560148	21560315	+
GWHAAZE00000004	exon	21561757	21562026	+
GWHAAZE00000004	exon	21562124	21562233	+
GWHAAZE00000004	exon	21562686	21562776	+
GWHAAZE00000004	exon	21562856	21563125	+
GWHAAZE00000004	exon	21563801	21564079	+
GWHAAZE00000004	CDS	21560148	21560315	+
GWHAAZE00000004	CDS	21561757	21562026	+
GWHAAZE00000004	CDS	21562124	21562233	+
GWHAAZE00000004	CDS	21562686	21562776	+
GWHAAZE00000004	CDS	21562856	21563125	+
GWHAAZE00000004	CDS	21563801	21564079	+

Transcript Sequence
>GWHTAAZE014931 ATGGCATCAGCATCTCTCCTCAAGTCGTCTCCAGTCCTCGACAAATCTGAATGGCTCAAGGGTCAGACCCTCCGCCAGCCTTCGGCTATAGTCCGGTGCCACCCTGTTTCGCCGTCTTCACTCACCATTCGTGCCAGCTCCTATGCCGATGAGCTCATCAAAACCGCGAAAACTGTAGCATCACCAGGGCGAGGAATCTTGGCCATGGATGAATCAAATGCAACCTGTGGGAAGCGTCTAGCCTCGATCGGTCTAGAGAACACAGAGGCTAACCGCCAGGCCTACCGGACACTGCTTGTTAGCCCACCTGGGCTCGGAAACTACATCTCGGGTGCCATCCTCTTTGAGGAGACTTTATACCAATCCACTGTCGACGGCAAGAAGATAGTCGACATTCTCGTTGAGCAGGGCATTGTTCCTGGGATTAAGGTTGACAAGGGTCTTGTTCCCCTCGCTGGATCAAATGATGAATCGTGGTGCCAAGGTCTAGATGGCCTTGCTTCCCGCTCTGCTGCTTACTATCAACAGGGTGCTCGTTTTGCCAAATGGCGTACCGTGGTGAGCATTCCCAATGGCCCATCTGAACTTGCAGTGAAAGAAGCAGCATGGGGTCTTGCTCGTTATGCTGCCATTTCTCAGGACAATGGGTTGGTCCCGATTGTTGAGCCTGAGATTTTGCTTGATGGTGAGCATGGGATTGATAGGACATTCGAAGTTGCACAAAAGGTGTGGGCCGAGGTCTTCTTCTACTTAGCTGAGAACAATGTCATGTTTGAAGGTATCCTCCTCAAGCCCAGCATGGTTACTCCCGGAGCAGAGTGCAAGGAGAGGGCCACGCCCGAAAAGGTTGCTGAATACACGCTCAATCTTCTAAAGAGGAGAATCCCTCCTGCAGTTCCTGGAATCATGTTTTTGTCTGGTGGGCAATCTGAAGTGGAGGCTACTCTGAACTTGAATGCGATGAACCAAGCTCCGAACCCATGGCATGTATCGTTCTCGTATGCAAGGGCACTTCAGAACACTTGCCTCAAGACATGGGGAGGAAGACCGGAGAATGTGAAGGCGGCTCAGGAAGCTTTGCTTATTAGAGCAAAGGCCAATTCTCTTGCTCAGCTTGGAAAATACACCGGTGAGGGAGAGTCCGACGAGGCCAAGAAAGGAATGTTCGTCAAGGGCTATGTCTACTAA

Network for GWHGAAZE014917

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00274.20	Glycolytic	51	395	1.90E-158

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01623	ALDO	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Glycolysis / Gluconeogenesis	map00010
		Pentose phosphate pathway	map00030
		Fructose and mannose metabolism	map00051
		Carbon fixation in photosynthetic organisms	map00710
		Methane metabolism	map00680
		HIF-1 signaling pathway	map04066

Gene Ontology

GO term	Ontology	Name
GO:0006096	biological_process	glycolytic process
GO:0003824	molecular_function	catalytic activity
GO:0004332	molecular_function	fructose-bisphosphate aldolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	409.017
	SRR3591706	second leaf	2765.406
	SRR3591707	mature leaf	3973.452
	SRR3591708	Shoot apex	828.662
	SRR3591709	Stem	383.978
	SRR3591710	White floral bud	253.534
	SRR3591711	White flower	99.353
	SRR3591712	Green floral bud	53.471
	SRR3591713	Yellow flower	62.290
SRP173429	SRR8316895	Juvenile bud stage	257.378
	SRR8316896	Juvenile bud stage	227.029
	SRR8316897	Juvenile bud stage	170.041
	SRR8316894	Third green stage	83.577
	SRR8316900	Third green stage	144.375
	SRR8316901	Third green stage	123.440
	SRR8316898	Complete white stage	63.287
	SRR8316899	Complete white stage	60.087
	SRR8316903	Complete white stage	116.697
	SRR8316902	Silver flowering stage	17.965
	SRR8316904	Silver flowering stage	22.676
	SRR8316905	Silver flowering stage	15.219
	SRR8316906	Gold flowering stage	15.195
	SRR8316907	Gold flowering stage	20.518
	SRR8316908	Gold flowering stage	23.036
SRP132670	SRR6706286	Control	119.386
	SRR6706287	Light intensity 50%	96.820
	SRR6706288	Light intensity 20%	87.606
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	122.467
	CNS0095593	Slightly white alabastrum(diploid) 2	81.532
	CNS0095594	Slightly white alabastrum(diploid) 3	100.000
	CNS0095595	Whole white alabastrum(diploid) 2	88.684
	CNS0095596	Whole white alabastrum(diploid) 3	62.090
	CNS0095597	Whole white alabastrum(diploid) 4	51.854
	CNS0095598	Silvery flower (diploied) 1	311.744
	CNS0095599	Silvery flower (diploied) 2	280.425
	CNS0095600	Silvery flower (diploied) 3	75.040
	CNS0095601	Golden flower (diploid) 1	330.169
	CNS0095602	Golden flower (diploid) 2	253.895
	CNS0095603	Golden flower (diploid) 3	255.559
	CNS0095604	Slightly white alabastrum(tetraploid) 1	143.448
	CNS0095605	Slightly white alabastrum(tetraploid) 2	169.700
	CNS0095606	Slightly white alabastrum(tetraploid) 3	256.440
	CNS0095607	Whole white alabastrum(tetraploid) 1	92.724
	CNS0095608	Whole white alabastrum(tetraploid) 2	53.621
	CNS0095609	Whole white alabastrum(tetraploid) 3	116.493
	CNS0095610	Silvery flower (tetraploid) 1	118.885
	CNS0095611	Silvery flower (tetraploid) 2	203.061
	CNS0095612	Silvery flower (tetraploid) 3	123.186
	CNS0095613	Golden flower (tetraploid) 1	83.387
	CNS0095614	Golden flower (tetraploid) 2	258.781
	CNS0095615	Golden flower (tetraploid) 3	93.471
CRA001975	CRR073297	Stem 1	335.640
	CRR073298	Stem 2	283.500
	CRR073299	Stem 3	421.804
	CRR073300	Leaf 1	51.734
	CRR073301	Leaf 2	74.145
	CRR073302	Leaf 3	68.772
	CRR073303	Juvenile bud 1	46.089
	CRR073304	Juvenile bud 2	51.145
	CRR073305	Juvenile bud 3	43.578
	CRR073306	Third green 1	149.661
	CRR073307	Third green 2	184.806
	CRR073308	Third green 3	115.409
	CRR073309	Second white 1	31.047
	CRR073310	Second white 2	20.280
	CRR073311	Second white 3	11.159
	CRR073312	Silver flowering 1	38.211
	CRR073313	Silver flowering 2	56.749
	CRR073314	Silver flowering 3	40.813
	CRR073315	Gold flowering 1	3583.503
	CRR073316	Gold flowering 2	3678.434
	CRR073317	Gold flowering 3	3818.116
	CRR073318	Tawny withering 1	159.524
	CRR073319	Tawny withering 2	175.300
	CRR073320	Tawny withering 3	140.761