Detail information of GWHGAAZE014903


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007046785.15.69751E-98Lateral root primordium protein-related, putative [Theobroma cacao]
Swissprottr|Q9SD40|SRS1_ARATH6E-77Protein SHI RELATED SEQUENCE 1
trEMBLtr|A0A061DFV6|A0A061DFV6_THECC2E-98Lateral root primordium protein-related, putative {ECO:0000313|EMBL:EOX90942.1}
TAIR10AT3G51060.11E-58Lateral root primordium (LRP) protein-related

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene2123458021235694-
GWHAAZE00000004mRNA2123458021235694-
GWHAAZE00000004exon2123458021234941-
GWHAAZE00000004exon2123515721235694-
GWHAAZE00000004CDS2123515721235694-
GWHAAZE00000004CDS2123458021234941-
Transcript Sequence

Network for GWHGAAZE014903

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05142.13DUF702932342.20E-61
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySRS

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.156
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex1.878
SRR3591709Stem2.304
SRR3591710White floral bud0.434
SRR3591711White flower1.116
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.646
SRP173429 SRR8316895Juvenile bud stage 1.124
SRR8316896Juvenile bud stage 0.159
SRR8316897Juvenile bud stage 0.177
SRR8316894Third green stage 0.183
SRR8316900Third green stage 0.183
SRR8316901Third green stage 0.286
SRR8316898Complete white stage 0.191
SRR8316899Complete white stage 0.564
SRR8316903Complete white stage 0.427
SRR8316902Silver flowering stage0.041
SRR8316904Silver flowering stage0.076
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.094
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.200
SRR6706287Light intensity 50%0.082
SRR6706288Light intensity 20%0.052
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.878
CNS0095593Slightly white alabastrum(diploid) 20.155
CNS0095594Slightly white alabastrum(diploid) 30.532
CNS0095595Whole white alabastrum(diploid) 20.600
CNS0095596Whole white alabastrum(diploid) 30.788
CNS0095597Whole white alabastrum(diploid) 40.026
CNS0095598Silvery flower (diploied) 10.389
CNS0095599Silvery flower (diploied) 20.073
CNS0095600Silvery flower (diploied) 30.259
CNS0095601Golden flower (diploid) 10.207
CNS0095602Golden flower (diploid) 20.605
CNS0095603Golden flower (diploid) 30.487
CNS0095604Slightly white alabastrum(tetraploid) 10.000
CNS0095605Slightly white alabastrum(tetraploid) 20.179
CNS0095606Slightly white alabastrum(tetraploid) 30.575
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 10.002
CNS0095611Silvery flower (tetraploid) 20.178
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.022
CNS0095614Golden flower (tetraploid) 20.163
CNS0095615Golden flower (tetraploid) 30.155
CRA001975CRR073297Stem 10.565
CRR073298Stem 20.438
CRR073299Stem 30.247
CRR073300Leaf 10.107
CRR073301Leaf 20.311
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.114
CRR073306Third green 10.227
CRR073307Third green 20.000
CRR073308Third green 30.043
CRR073309Second white 10.213
CRR073310Second white 20.051
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.536
CRR073318Tawny withering 16.725
CRR073319Tawny withering 25.798
CRR073320Tawny withering 33.388