Gene detail

Detail information of GWHGAAZE014895

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004289103.1	0	PREDICTED: 3-epi-6-deoxocathasterone 23-monooxygenase-like [Fragaria vesca subsp. vesca]
Swissprot	tr\|Q9M066\|C90C1_ARATH	0	3-epi-6-deoxocathasterone 23-monooxygenase
trEMBL	tr\|A0A061DFW3\|A0A061DFW3_THECC	0	Cytochrome P450 superfamily protein {ECO:0000313\|EMBL:EOX90957.1}
TAIR10	AT4G36380.1	1E-151	Cytochrome P450 superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	21090878	21096981	+
GWHAAZE00000004	mRNA	21090878	21096981	+
GWHAAZE00000004	exon	21090878	21091173	+
GWHAAZE00000004	exon	21091564	21091678	+
GWHAAZE00000004	exon	21092365	21092655	+
GWHAAZE00000004	exon	21095635	21095724	+
GWHAAZE00000004	exon	21095922	21096069	+
GWHAAZE00000004	exon	21096227	21096333	+
GWHAAZE00000004	exon	21096550	21096677	+
GWHAAZE00000004	exon	21096891	21096981	+
GWHAAZE00000004	CDS	21090878	21091173	+
GWHAAZE00000004	CDS	21091564	21091678	+
GWHAAZE00000004	CDS	21092365	21092655	+
GWHAAZE00000004	CDS	21095635	21095724	+
GWHAAZE00000004	CDS	21095922	21096069	+
GWHAAZE00000004	CDS	21096227	21096333	+
GWHAAZE00000004	CDS	21096550	21096677	+
GWHAAZE00000004	CDS	21096891	21096981	+

Transcript Sequence
>GWHTAAZE014909 ATGCCAATAGTAGTGTCTACGGATCCGGAGGTGAACAAGGCAGTTTTACAAAACAATGGGAGTGTATTCATACCTTGTTATCCCAAATCAATCACTGAATTGCTCGGAAAATCTTCAATCCTTCAAATGAATGGAAGCCTACAGAAGAGAGTTCACGCGCTTATCGGAAGTTTTTTCAAATCTCCTCAGTTAAAAGCTCGTATCACTCGAGACATTGAGATATCTGTCAAACATTCCTTGCTTAGTTGGAATGATCATAAAAACTACCCTCTTTACCTCCAAGAAGAAACCAAAAGCATTGGGCCGGGTGAAGAGATGGACTTCCTCAAGCAAGAATTTGAAGAATTCATCAAAGGGTTGATTTGTTTACCTATTAAACTCCCAGGGACCAGACTATATAAATCTTTGAAGGCCAAGGAGAGGTTGTTAGAGAAGGTGAGAAGGATTGTTGAGGAGAGAAAAATGGCTATGGACAAGACTACTAGTAGTAGCAGCAGCAGCTGGTTAGTATTAAAGGATGCAGTTGATGTTCTGCTTCGCGACACAGGAGAGTCAAATGAGGCGCAGCAAAGCCTGCCGTTGGATTTCATAAGTGGGAATATCATAGAGATGATGATCCCTGGAGAGGATTCTGTCCCCATGGTCATGACTTTGGCTGTCAAATACCTAAGTGACAGCCCAATCGCTCTAGGGCGTCTAGTGGAAGAGAACATGGAATTGAAGAAGCAGAAGGCTCATTCCTCCGGTGAATATGCTTGGACCGATTACATGTCTTTGCCATTTACTCAAAATGTGATCAGTGAGACACTTAGAATGGCAAATATCATCAATGCTGTTTGGAGAAAAGCTCTCAAAGATGTGGAAATTAAAGGTGACTTTTAATTAAAATAAATTAAAATGCAGTAATATATGTTATATTAATTGATGCGGCTTGCAATGGGCTACTTGATACCAAAAGGATGGTGTGTTTTGGCATCATTCAGTTCTGTTCATATGGATGAAGAAAATTATGACAATCCGTACCATTTTGATCCGTGGAGATGGGAGAGAAGGGAAGCTAGTGTTAACAGCAACACATTCACACCATTTGGTGGTGGGCAGAGGTTGTGTCCTGGTTTAGAGCTTTCAAGGCTCGAAATCTCTATTTTCCTTCACCACTTTGTTACTACTTACAGATGGGTGGCTGAGAAGGATGACATTGTCACCTTTCCGACAGTCAAGATGAAGCGAAAGATGCCCATCACCGTCAGGCCCGTACAACACTGA

Network for GWHGAAZE014895

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	129	300	1.00E-14
PF00067.23	p450	309	397	3.20E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12637	CYP90C1, ROT3	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Brassinosteroid biosynthesis	map00905

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding
GO:0004497	molecular_function	monooxygenase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.508
	SRR3591706	second leaf	15.082
	SRR3591707	mature leaf	33.621
	SRR3591708	Shoot apex	11.812
	SRR3591709	Stem	10.590
	SRR3591710	White floral bud	49.276
	SRR3591711	White flower	30.858
	SRR3591712	Green floral bud	37.273
	SRR3591713	Yellow flower	17.260
SRP173429	SRR8316895	Juvenile bud stage	14.277
	SRR8316896	Juvenile bud stage	22.949
	SRR8316897	Juvenile bud stage	10.556
	SRR8316894	Third green stage	13.011
	SRR8316900	Third green stage	52.412
	SRR8316901	Third green stage	53.613
	SRR8316898	Complete white stage	17.723
	SRR8316899	Complete white stage	123.974
	SRR8316903	Complete white stage	25.586
	SRR8316902	Silver flowering stage	3.315
	SRR8316904	Silver flowering stage	3.777
	SRR8316905	Silver flowering stage	2.552
	SRR8316906	Gold flowering stage	3.089
	SRR8316907	Gold flowering stage	3.469
	SRR8316908	Gold flowering stage	2.970
SRP132670	SRR6706286	Control	27.421
	SRR6706287	Light intensity 50%	25.473
	SRR6706288	Light intensity 20%	31.352
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.899
	CNS0095593	Slightly white alabastrum(diploid) 2	20.304
	CNS0095594	Slightly white alabastrum(diploid) 3	21.406
	CNS0095595	Whole white alabastrum(diploid) 2	25.559
	CNS0095596	Whole white alabastrum(diploid) 3	22.039
	CNS0095597	Whole white alabastrum(diploid) 4	25.777
	CNS0095598	Silvery flower (diploied) 1	16.247
	CNS0095599	Silvery flower (diploied) 2	16.354
	CNS0095600	Silvery flower (diploied) 3	33.961
	CNS0095601	Golden flower (diploid) 1	21.273
	CNS0095602	Golden flower (diploid) 2	28.766
	CNS0095603	Golden flower (diploid) 3	28.325
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.178
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.290
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.512
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.556
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.725
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.972
	CNS0095610	Silvery flower (tetraploid) 1	55.842
	CNS0095611	Silvery flower (tetraploid) 2	89.751
	CNS0095612	Silvery flower (tetraploid) 3	11.042
	CNS0095613	Golden flower (tetraploid) 1	15.946
	CNS0095614	Golden flower (tetraploid) 2	25.180
	CNS0095615	Golden flower (tetraploid) 3	25.356
CRA001975	CRR073297	Stem 1	15.848
	CRR073298	Stem 2	15.505
	CRR073299	Stem 3	8.879
	CRR073300	Leaf 1	40.593
	CRR073301	Leaf 2	36.225
	CRR073302	Leaf 3	31.988
	CRR073303	Juvenile bud 1	45.546
	CRR073304	Juvenile bud 2	50.132
	CRR073305	Juvenile bud 3	38.665
	CRR073306	Third green 1	2.904
	CRR073307	Third green 2	4.403
	CRR073308	Third green 3	3.290
	CRR073309	Second white 1	1.011
	CRR073310	Second white 2	1.420
	CRR073311	Second white 3	0.580
	CRR073312	Silver flowering 1	0.107
	CRR073313	Silver flowering 2	0.493
	CRR073314	Silver flowering 3	0.119
	CRR073315	Gold flowering 1	1.978
	CRR073316	Gold flowering 2	2.426
	CRR073317	Gold flowering 3	1.717
	CRR073318	Tawny withering 1	3.991
	CRR073319	Tawny withering 2	5.831
	CRR073320	Tawny withering 3	3.533