Gene detail

Detail information of GWHGAAZE014862

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009762330.1	0	PREDICTED: mannan endo-1,4-beta-mannosidase 7-like [Nicotiana sylvestris]
Swissprot	tr\|Q9FJZ3\|MAN7_ARATH	0	Mannan endo-1,4-beta-mannosidase 7 (Precursor)
trEMBL	tr\|K4BB13\|K4BB13_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc02g084990.2.1}
TAIR10	AT5G66460.1	3E-167	Glycosyl hydrolase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	20476169	20478813	+
GWHAAZE00000004	mRNA	20476169	20478813	+
GWHAAZE00000004	exon	20476169	20476495	+
GWHAAZE00000004	exon	20476638	20476832	+
GWHAAZE00000004	exon	20477001	20477123	+
GWHAAZE00000004	exon	20477426	20477628	+
GWHAAZE00000004	exon	20478357	20478813	+
GWHAAZE00000004	CDS	20476169	20476495	+
GWHAAZE00000004	CDS	20476638	20476832	+
GWHAAZE00000004	CDS	20477001	20477123	+
GWHAAZE00000004	CDS	20477426	20477628	+
GWHAAZE00000004	CDS	20478357	20478813	+

Transcript Sequence
>GWHTAAZE014876 ATGAAGCATTTAGCACTTGTAGTTTTTCTTGTTCTTCTACTCCAACAAAAACATGTCAATGTACAAGTAGAAGCTGCAGGGAATGGATTCATCACAACAAGAGGAGTGCATTTCATGTTGAATGGTAGCCCTTACTATGCCAATGGGTTCAATGCCTACTGGCTCATGTATGTGGCTTCTGACCCTTCACAAAGACCCAAAGTTTCAGCTGCTTTCAAAGAAGCCTCTTCCCATGGCCTCACTGTTGCAAGAACTTGGGCTTTCAGTGATGGTGGCTATAGCCCTTTACAATACGCCCCTGGCTCTTACAACCAACAAATGTTTAAGGGGTTGGATTTTGTTGTGGCTGAGGCTAGAAGATATGGGATTAAGCTTGTGTTGAGTTTAGCAAATAACTATGAGAGCTATGGGGGTAAGAAACAGTATGTGAATTGGGCTAGAAATCAAGGGCAGTACCTCACATCTGATGATGATTTCTTTAGAAACCCTGTTGTTAAGGGGTTTTACAAGAACCATGTAAAGACCGTTCTTAACAGGTATAACACCTTTACTGGTGTTGTATACAAGAATGACCCAACAATAATGGCCTGGGAGCTTATGAATGAACCTAGATGCCAATCAGATTCTTCTGGGAGGACTATTCAGGCTTGGATAACGGAAATGGCTTATCATGTGAAGTCAATAGACAGAAACCACTTGCTGGAAGTTGGCTTGGAAGGATTTTATGGGCAAACTACACCTCAGAGGAAGAGACTTAATCCTGGTTTTGATATTGGAACCGACTTCATTGCTAACAATCGCATACGTGGTATCGATTTCGCTACTGTCCACTCCTATCCTGATCAATGGCTAACCAGCTCAAATGATCAAAGCCAACTCTCGTTTCTCAATAACTGGCTTGACACCCACATTCAAGATGCCCAAAACCTTCTTCGGAAGCCACTCCTCATCACGGAATTCGGAAAATCCGCAAAAGACTCTGGTTTCAACACCTACCAAAGGGACCTTCTCTTCAATACTGTCTATAACAAAGTATACTCATCGGCCAAACGCGGTGGTGCAGCAGCTGGTGGCCTATTCTGGCAACTTCTAGGCGAAAACATGGGCACATTAGGTGACGGGTACGATATAGTTTTAAGCCAGAGCCCCTCAACTGCAAATTTGATAGCTCAACAATCTCACAAGCTTTATCAAATTCGGAAAATATTTGAAAGGATGAGAAATGTGGAGATGTGGAAGAAGGCGAGGGCAGTTAGGAGGGCTGAGTGGTTGGCTAAGAACAAGGGAAAGCAAATCGGGCATTGA

Network for GWHGAAZE014862

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00150.19	Cellulase	67	333	4.30E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K19355	MAN	Metabolic pathways	map01100
K19355	MAN	Fructose and mannose metabolism	map00051

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	571.763
	SRR3591706	second leaf	406.140
	SRR3591707	mature leaf	213.400
	SRR3591708	Shoot apex	251.785
	SRR3591709	Stem	122.120
	SRR3591710	White floral bud	151.692
	SRR3591711	White flower	99.221
	SRR3591712	Green floral bud	511.969
	SRR3591713	Yellow flower	14.337
SRP173429	SRR8316895	Juvenile bud stage	49.350
	SRR8316896	Juvenile bud stage	75.146
	SRR8316897	Juvenile bud stage	34.610
	SRR8316894	Third green stage	86.716
	SRR8316900	Third green stage	344.181
	SRR8316901	Third green stage	253.116
	SRR8316898	Complete white stage	30.029
	SRR8316899	Complete white stage	342.816
	SRR8316903	Complete white stage	51.347
	SRR8316902	Silver flowering stage	18.274
	SRR8316904	Silver flowering stage	22.582
	SRR8316905	Silver flowering stage	12.057
	SRR8316906	Gold flowering stage	18.644
	SRR8316907	Gold flowering stage	9.945
	SRR8316908	Gold flowering stage	13.857
SRP132670	SRR6706286	Control	255.770
	SRR6706287	Light intensity 50%	248.434
	SRR6706288	Light intensity 20%	247.966
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	176.354
	CNS0095593	Slightly white alabastrum(diploid) 2	167.982
	CNS0095594	Slightly white alabastrum(diploid) 3	92.245
	CNS0095595	Whole white alabastrum(diploid) 2	162.155
	CNS0095596	Whole white alabastrum(diploid) 3	198.403
	CNS0095597	Whole white alabastrum(diploid) 4	144.666
	CNS0095598	Silvery flower (diploied) 1	74.652
	CNS0095599	Silvery flower (diploied) 2	49.096
	CNS0095600	Silvery flower (diploied) 3	70.627
	CNS0095601	Golden flower (diploid) 1	75.048
	CNS0095602	Golden flower (diploid) 2	54.087
	CNS0095603	Golden flower (diploid) 3	50.921
	CNS0095604	Slightly white alabastrum(tetraploid) 1	220.752
	CNS0095605	Slightly white alabastrum(tetraploid) 2	175.613
	CNS0095606	Slightly white alabastrum(tetraploid) 3	458.341
	CNS0095607	Whole white alabastrum(tetraploid) 1	122.043
	CNS0095608	Whole white alabastrum(tetraploid) 2	111.140
	CNS0095609	Whole white alabastrum(tetraploid) 3	285.018
	CNS0095610	Silvery flower (tetraploid) 1	28.840
	CNS0095611	Silvery flower (tetraploid) 2	57.847
	CNS0095612	Silvery flower (tetraploid) 3	28.535
	CNS0095613	Golden flower (tetraploid) 1	1.273
	CNS0095614	Golden flower (tetraploid) 2	21.775
	CNS0095615	Golden flower (tetraploid) 3	12.934
CRA001975	CRR073297	Stem 1	173.861
	CRR073298	Stem 2	213.665
	CRR073299	Stem 3	180.539
	CRR073300	Leaf 1	421.971
	CRR073301	Leaf 2	334.972
	CRR073302	Leaf 3	334.468
	CRR073303	Juvenile bud 1	551.732
	CRR073304	Juvenile bud 2	244.369
	CRR073305	Juvenile bud 3	440.555
	CRR073306	Third green 1	18.524
	CRR073307	Third green 2	20.584
	CRR073308	Third green 3	32.233
	CRR073309	Second white 1	21.046
	CRR073310	Second white 2	17.511
	CRR073311	Second white 3	6.377
	CRR073312	Silver flowering 1	3.788
	CRR073313	Silver flowering 2	5.966
	CRR073314	Silver flowering 3	6.415
	CRR073315	Gold flowering 1	15.278
	CRR073316	Gold flowering 2	14.226
	CRR073317	Gold flowering 3	32.734
	CRR073318	Tawny withering 1	54.474
	CRR073319	Tawny withering 2	39.567
	CRR073320	Tawny withering 3	78.656