Gene detail

Detail information of GWHGAAZE014857

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007046888.1	2.479E-145	ATPase family associated with various cellular activities, putative [Theobroma cacao]
Swissprot	tr\|Q8VXX4\|RFC3_ARATH	8E-55	Replication factor C subunit 3
trEMBL	tr\|A0A061DFP5\|A0A061DFP5_THECC	9E-146	ATPase family associated with various cellular activities, putative {ECO:0000313\|EMBL:EOX91045.1}
TAIR10	AT5G27740.1	2E-44	ATPase family associated with various cellular activities (AAA)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	20406885	20409754	+
GWHAAZE00000004	mRNA	20406885	20409754	+
GWHAAZE00000004	exon	20406885	20407049	+
GWHAAZE00000004	exon	20407187	20407421	+
GWHAAZE00000004	exon	20407508	20407689	+
GWHAAZE00000004	exon	20407820	20407956	+
GWHAAZE00000004	exon	20408943	20409012	+
GWHAAZE00000004	exon	20409110	20409184	+
GWHAAZE00000004	exon	20409257	20409302	+
GWHAAZE00000004	exon	20409674	20409754	+
GWHAAZE00000004	CDS	20406885	20407049	+
GWHAAZE00000004	CDS	20407187	20407421	+
GWHAAZE00000004	CDS	20407508	20407689	+
GWHAAZE00000004	CDS	20407820	20407956	+
GWHAAZE00000004	CDS	20408943	20409012	+
GWHAAZE00000004	CDS	20409110	20409184	+
GWHAAZE00000004	CDS	20409257	20409302	+
GWHAAZE00000004	CDS	20409674	20409735	+
GWHAAZE00000004	three_prime_UTR	20409736	20409754	+

Transcript Sequence
>GWHTAAZE014871 TTATCCAATGAAATGTGTCCGCACATTCTGCTCAAGGGACCTCCTGGTTCGGGGAAGAAAGCACTGGCCATGGCTCTTCTACGTGAAATCTATGGAGACTCTGTTTCAAATGTAATTTTCTTGGTTGTCATATTCAAAATTACACCTCTAGGAAATTACTTTCAGATTGTTTTATCAAACTTCCCAAATTCCATACCAGATCCACTTTTGCTCTATCGACAGGAAGCAAGGCCAGTGCAAGTGGTAGTTCCAGTAATCTCCAGTCCTCACCATGTGGAGCTCAATGTATTCTTGGAACCTAATGCTAAATACGCACTAATGGCTTTAGTGAAGCAAATAAGCAGTGACAATTTAGTTTCCCCTGAAATCAGCACTGTTAATTTCAAGCCAGATTATACAGTAATGGTTCTATATGATGTCGACAAAGCTGATGACCATATTCAACACATGATAAAATGGGTCATGGACTGTTATACAGATATTTGTAAACTTGTAATTCTCTGTGAAGATGATATAGATATACTTGAACAAATTAAAAGTCGCTGCAAAGTCCTTGAGGTTGATGCTCCTGTAACTCATGAAATTATGGAAGTTCTTATTCAGATAGCGAGAAAAGAAAATTTCGACCTGTCAATGAACTTTGCTGCTAAGATTGCTACCAAATCAAAGCAAAACCTAAGGAGAGCAATTATGGCACTTGAAGCATCCAAAGCACACAAACTATTCTTCATACGGGGAAAATTCCAGAAACTTCTAGTGGATTTTGTTCATCCAAAATTGATTCTCCAGAAGTTGGTTGAACAGTTCCTTAAGGGTGTTGAAGCTAGTTTGAAAAGGGAACTCTATTACTGGCATGGTTATTATGAGAAGAGACTCCCATTGGGAATGAGTGCTTTGCTGAAATTAGAAGAATTTATGGCAAAGTTCATTAGCATATACAGGAAGAGTTGCAGCAATCGGCAGTACTCATAGCATATTCGAGGCTAGAGGA

Network for GWHGAAZE014857

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10756	RFC3_5	DNA replication	map03030
		Nucleotide excision repair	map03420
		Mismatch repair	map03430

Gene Ontology

GO term	Ontology	Name
GO:0006260	biological_process	DNA replication
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.624
	SRR3591706	second leaf	0.419
	SRR3591707	mature leaf	0.125
	SRR3591708	Shoot apex	0.412
	SRR3591709	Stem	0.585
	SRR3591710	White floral bud	0.489
	SRR3591711	White flower	0.119
	SRR3591712	Green floral bud	0.965
	SRR3591713	Yellow flower	0.185
SRP173429	SRR8316895	Juvenile bud stage	1.783
	SRR8316896	Juvenile bud stage	3.269
	SRR8316897	Juvenile bud stage	0.244
	SRR8316894	Third green stage	1.560
	SRR8316900	Third green stage	3.355
	SRR8316901	Third green stage	3.863
	SRR8316898	Complete white stage	0.381
	SRR8316899	Complete white stage	2.481
	SRR8316903	Complete white stage	1.274
	SRR8316902	Silver flowering stage	0.905
	SRR8316904	Silver flowering stage	1.698
	SRR8316905	Silver flowering stage	0.745
	SRR8316906	Gold flowering stage	1.733
	SRR8316907	Gold flowering stage	0.828
	SRR8316908	Gold flowering stage	0.606
SRP132670	SRR6706286	Control	0.769
	SRR6706287	Light intensity 50%	0.636
	SRR6706288	Light intensity 20%	0.982
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.588
	CNS0095593	Slightly white alabastrum(diploid) 2	3.890
	CNS0095594	Slightly white alabastrum(diploid) 3	3.091
	CNS0095595	Whole white alabastrum(diploid) 2	2.039
	CNS0095596	Whole white alabastrum(diploid) 3	1.255
	CNS0095597	Whole white alabastrum(diploid) 4	1.964
	CNS0095598	Silvery flower (diploied) 1	2.807
	CNS0095599	Silvery flower (diploied) 2	1.561
	CNS0095600	Silvery flower (diploied) 3	1.243
	CNS0095601	Golden flower (diploid) 1	2.307
	CNS0095602	Golden flower (diploid) 2	1.648
	CNS0095603	Golden flower (diploid) 3	1.145
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.212
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.331
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.456
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.064
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.199
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.382
	CNS0095610	Silvery flower (tetraploid) 1	0.281
	CNS0095611	Silvery flower (tetraploid) 2	0.470
	CNS0095612	Silvery flower (tetraploid) 3	0.088
	CNS0095613	Golden flower (tetraploid) 1	0.008
	CNS0095614	Golden flower (tetraploid) 2	0.075
	CNS0095615	Golden flower (tetraploid) 3	0.240
CRA001975	CRR073297	Stem 1	1.695
	CRR073298	Stem 2	1.151
	CRR073299	Stem 3	0.536
	CRR073300	Leaf 1	1.113
	CRR073301	Leaf 2	0.978
	CRR073302	Leaf 3	0.235
	CRR073303	Juvenile bud 1	0.496
	CRR073304	Juvenile bud 2	0.353
	CRR073305	Juvenile bud 3	1.284
	CRR073306	Third green 1	0.219
	CRR073307	Third green 2	0.133
	CRR073308	Third green 3	0.059
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.115
	CRR073311	Second white 3	0.005
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.093
	CRR073315	Gold flowering 1	0.457
	CRR073316	Gold flowering 2	0.728
	CRR073317	Gold flowering 3	0.180
	CRR073318	Tawny withering 1	2.108
	CRR073319	Tawny withering 2	2.448
	CRR073320	Tawny withering 3	1.970