Gene detail

Detail information of GWHGAAZE014838

Functional Annotation

Database	Orthologs	Annotation
Nr	CBI17531.3	unnamed protein product [Vitis vinifera]
Swissprot	tr\|O64989\|C90B1_ARATH	Cytochrome P450 90B1
trEMBL	tr\|A0A068U0G5\|A0A068U0G5_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313\|EMBL:CDP02030.1}
TAIR10	AT3G50660.1	Cytochrome P450 superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	20044189	20052954	+
GWHAAZE00000004	mRNA	20044189	20052954	+
GWHAAZE00000004	exon	20044189	20044394	+
GWHAAZE00000004	exon	20044506	20044830	+
GWHAAZE00000004	exon	20045154	20045306	+
GWHAAZE00000004	exon	20045469	20045717	+
GWHAAZE00000004	exon	20045840	20045932	+
GWHAAZE00000004	exon	20046061	20046139	+
GWHAAZE00000004	exon	20047419	20047528	+
GWHAAZE00000004	exon	20052661	20052954	+
GWHAAZE00000004	CDS	20044189	20044394	+
GWHAAZE00000004	CDS	20044506	20044830	+
GWHAAZE00000004	CDS	20045154	20045306	+
GWHAAZE00000004	CDS	20045469	20045717	+
GWHAAZE00000004	CDS	20045840	20045932	+
GWHAAZE00000004	CDS	20046061	20046139	+
GWHAAZE00000004	CDS	20047419	20047528	+
GWHAAZE00000004	CDS	20052661	20052954	+

Transcript Sequence
>GWHTAAZE014852 ATGCCTGACTTGGATTTTGTCCTCTTTATTCTCTCTTCAATCTTAACTATTCTTCTCATCTTCAATCTCATCACCAAACACAAAAGAATATCCCTCAATCTACCGCCCGGCAACACTGGCTGGCCTTTTATCGGAGAAACTATCGGCTACCTCAAGCCCTACCCTGCTATCTCGATAGGCGACTTCATGGAGCAGCACATATCGAGGTACGGGAAAATATACAAGTCGAATTTGTTCGGGGAGCCGACAATTGTATCGGCGGATGCAGGGCTGAATAGATTTATACTGCAGAATGAAGGGAGATTGTTTGAGTGTAGTTATCCAAGAAGTATTGGTGGGATTCTTGGGAAATGGTCAATGTTGGTTTTAGTTGGGGACATGCATAGAGATATGAGGATTATATCTCTTAATTTCTTGAGCAATGCTCGGCTTAGGACTCATCTTTTACCTGAGGTTGAGAAGCATACTCTCTTGGTCTTGAACTCTTGGAAGGATAATTCTACTTTTTGTGCTCAAGATGAAGCAAAAAAGTTTACTTTTAATTTGATGGCTAAGCATATAATGAGCTTGGATCCTGGAAAACCCGAAACTGAGCAATTGAAAAAAGAGTACATTACTTTCATGAAAGGAGTGGTTTCTCCACCTTTGAATTTTCCGGGAACTGCATATAGAAAGGCCTTGCAGTCTCGATCGACGATACTAAAATTCATAGAGAGGAGAATGGAAGAGAGGAAAATTAGTGAATCAGGCAAAGAAAATTTGAAGGAAGATGATTTACTTGGGTGGGTATTGAAGAATTCAAATCTTTCAAAGGAGCAAATTCTTGATTTGGTGCTAAGCTTGCTTTTTGCTGGCCATGAAACTTCCTCTGTGGCTATAGCTTTAGCTATCTATTTCTTGCAAGCTTGTCCTATTGCTGTTCAACAATTACGAGAAGAACATAGTGAAATTGCAAGAGCAAAGAAGGAATCAGGAGAGACAGAGCTCAAATGGGATGACTACAAAAAAATGGAATTCACCCAGTGTGTTATTAGTGAGACTCTACGGCTTGGTAATGTAGTGAGGTTTCTCCACAGAAAGGCTTTGAAAGATGTTCGGTACAAAGGATATGACATTCCACGTGGGTGGAAAGTGCTACCGGTGATTGCAGCCGTGCATTTGGATCCTTCACTTTTTGACCATCCTCAACACTTCAACCCTTGGAGATGGCACCAGAGCAATCGCTTAAGTGCAAGCACGACAACAAGCAATAGTAACTTCATGCCATTTGGAGGAGGACCACGGCTATGTGCCGGATCTGAGCTAGCCAAAATGGAGATGGCCGTATTTATCCACCACTTAGTCCTCAACTTCCACTGGGAGTTAGCAGATTCCGATCAAGCTTTTGCCTTCCCATTTGTCGATTTCCCCAAGGGTCTACCAATTACAATTCGACAACACACAACCTCGTGCAAACAAGAAAGAAAAACATCAACATCATATCCCATTTCAATTGAAACTCCTCCTTAG

Network for GWHGAAZE014838

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	35	458	5.60E-63

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09587	CYP90B1, DWF4	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Brassinosteroid biosynthesis	map00905

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.103
	SRR3591706	second leaf	11.900
	SRR3591707	mature leaf	3.671
	SRR3591708	Shoot apex	11.204
	SRR3591709	Stem	4.914
	SRR3591710	White floral bud	6.310
	SRR3591711	White flower	6.533
	SRR3591712	Green floral bud	5.193
	SRR3591713	Yellow flower	2.085
SRP173429	SRR8316895	Juvenile bud stage	2.577
	SRR8316896	Juvenile bud stage	3.698
	SRR8316897	Juvenile bud stage	1.703
	SRR8316894	Third green stage	2.257
	SRR8316900	Third green stage	9.030
	SRR8316901	Third green stage	5.583
	SRR8316898	Complete white stage	1.533
	SRR8316899	Complete white stage	4.900
	SRR8316903	Complete white stage	3.144
	SRR8316902	Silver flowering stage	1.976
	SRR8316904	Silver flowering stage	3.508
	SRR8316905	Silver flowering stage	2.580
	SRR8316906	Gold flowering stage	3.466
	SRR8316907	Gold flowering stage	1.903
	SRR8316908	Gold flowering stage	2.443
SRP132670	SRR6706286	Control	6.528
	SRR6706287	Light intensity 50%	5.105
	SRR6706288	Light intensity 20%	4.305
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.446
	CNS0095593	Slightly white alabastrum(diploid) 2	3.065
	CNS0095594	Slightly white alabastrum(diploid) 3	4.536
	CNS0095595	Whole white alabastrum(diploid) 2	2.998
	CNS0095596	Whole white alabastrum(diploid) 3	3.949
	CNS0095597	Whole white alabastrum(diploid) 4	2.719
	CNS0095598	Silvery flower (diploied) 1	3.619
	CNS0095599	Silvery flower (diploied) 2	2.841
	CNS0095600	Silvery flower (diploied) 3	7.763
	CNS0095601	Golden flower (diploid) 1	3.076
	CNS0095602	Golden flower (diploid) 2	4.634
	CNS0095603	Golden flower (diploid) 3	3.956
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.454
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.753
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.587
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.264
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.447
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.100
	CNS0095610	Silvery flower (tetraploid) 1	6.121
	CNS0095611	Silvery flower (tetraploid) 2	6.458
	CNS0095612	Silvery flower (tetraploid) 3	3.473
	CNS0095613	Golden flower (tetraploid) 1	1.187
	CNS0095614	Golden flower (tetraploid) 2	3.295
	CNS0095615	Golden flower (tetraploid) 3	3.478
CRA001975	CRR073297	Stem 1	6.245
	CRR073298	Stem 2	6.984
	CRR073299	Stem 3	5.509
	CRR073300	Leaf 1	9.325
	CRR073301	Leaf 2	8.688
	CRR073302	Leaf 3	6.674
	CRR073303	Juvenile bud 1	2.464
	CRR073304	Juvenile bud 2	2.370
	CRR073305	Juvenile bud 3	2.946
	CRR073306	Third green 1	2.147
	CRR073307	Third green 2	2.189
	CRR073308	Third green 3	2.333
	CRR073309	Second white 1	0.178
	CRR073310	Second white 2	0.516
	CRR073311	Second white 3	0.179
	CRR073312	Silver flowering 1	0.003
	CRR073313	Silver flowering 2	0.152
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	2.892
	CRR073316	Gold flowering 2	5.484
	CRR073317	Gold flowering 3	2.954
	CRR073318	Tawny withering 1	20.926
	CRR073319	Tawny withering 2	9.863
	CRR073320	Tawny withering 3	22.140