Gene detail

Detail information of GWHGAAZE014835

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU17836.1	0	hypothetical protein MIMGU_mgv1a002201mg [Erythranthe guttata]
Swissprot	tr\|Q9ZNQ8\|PERK4_ARATH	0	Proline-rich receptor-like protein kinase PERK4
trEMBL	tr\|A0A022PQ19\|A0A022PQ19_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU17836.1}
TAIR10	AT2G18470.1	4E-152	roline-rich extensin-like receptor kinase 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	19949674	19952560	+
GWHAAZE00000004	mRNA	19949674	19952560	+
GWHAAZE00000004	exon	19949674	19950325	+
GWHAAZE00000004	exon	19950879	19950949	+
GWHAAZE00000004	exon	19951135	19951211	+
GWHAAZE00000004	exon	19951342	19951489	+
GWHAAZE00000004	exon	19951851	19952012	+
GWHAAZE00000004	exon	19952288	19952560	+
GWHAAZE00000004	CDS	19949674	19950325	+
GWHAAZE00000004	CDS	19950879	19950949	+
GWHAAZE00000004	CDS	19951135	19951211	+
GWHAAZE00000004	CDS	19951342	19951489	+
GWHAAZE00000004	CDS	19951851	19952012	+
GWHAAZE00000004	CDS	19952288	19952560	+

Transcript Sequence
>GWHTAAZE014849 GATCCATACTACACTAGTCCAACACCGTGGCACAGTCCCCAAGGACACATTGTCCACATTGCCCCACCACCGGGGGTCATGGGGACGCCTATAGGTGGTGGCGGCGGCTGGGCAGCACAACCGCATATAGGCGCCGATGGTGTTTGGGCAGCGGCACAACCGCATACGAGCTCAGAATTTAGCTCCGGTTACTCGGGAAATGGGCCAGCCCAGACCCCTATGCAAGCCCAATCACCAAATGTGGGCCTTGGGCTTAGCAAGAGCCAATTCACCTATGATGAACTCGCAGGAGCCACGGGCGGGTTCTCTCAAGGCAATCTATTGGGGCAGGGTGGGTTTGGCTATGTGCATAAAGGGGTGTTGCCCAATGGGCAGACGGTGGCGGTTAAGAGCTTGAAGACAGGCAGTGGGCAGGGGGAGAGGGAGTTTCAGGCAGAGGTTGAGATTATTAGTCGAGTCCATCATCGGCATCTAGTATCGCTTGTTGGGTATTGTATAGCGGACGGGCAAAGAATGTTGGTCTATGAGTTTGTTCCTAATAAAACGATGGAGTTCCATCTTCATGGCAAGGGTCGGCCCGTGATGGATTGGGTCACTAGGCTTCGTATTGCATTGGGATCAGCTAAAGGGCTTGCTTACCTTCACGAAGACTGTCACCCTAAGATTATTCATCGTGACATCAAAGCTGCTAATATTCTCCTTGACGACAAATTTGAGGCCATGGTGGCAGATTTTGGATTGGCTAAACTCTCTGCTGACAATAACACTCACGTTTCAACACGTGTCATGGGAACCTTTGGGTACTTGGCTCCAGAATATGCGTCAAGCGGTAAGCTAACTGAGAAATCTGATGTTTTCTCATTTGGGGTCATGCTCTTGGAACTCATAACGGGGCGAAAACCAGTGGACCCTAATCATAACTTTATGGAGGATAGTTTAGTAGACTGGGCTAGGCCACTTATAAGTAAAGCAGTTGATGATGGCAACTATAAAGCTTTGGTGGATCCACGTTTAGAGGACAACTTTGCTATTGATGAGATGGCACGCATGGTAGCATGCGCTTCTGCTTGCATTCGTCATTCTGCTAGACGGCGCCCAAAGATGACTCAGATTGCACGTGCGTTGGATGGAGATTCATCGTTGGACGACTTAGAGGGTGGGAAGGCATGGCAGGGCACTAGCTCAAGCGGAAGCAGTCAGCCGTATGACACTGGCGCGTACAATGCAGACATGATGAAGTTCAGGCAAATGGTAATGTCAAGCCAAGAATTCCTTAGCTCCGAATACGGAGGAGGGACGGATGAGTACTATGCACCGCCAAGTACAAGCGGCGACTCTAGGGATGCGGGCATTCATTCAGGCGCAGAGAGGCAAAAGATGTAG

Network for GWHGAAZE014835

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	104	374	8.50E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_PERK-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.475
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.061
	SRR3591709	Stem	0.746
	SRR3591710	White floral bud	125.015
	SRR3591711	White flower	6.044
	SRR3591712	Green floral bud	82.472
	SRR3591713	Yellow flower	3.232
SRP173429	SRR8316895	Juvenile bud stage	0.099
	SRR8316896	Juvenile bud stage	0.325
	SRR8316897	Juvenile bud stage	0.147
	SRR8316894	Third green stage	1.624
	SRR8316900	Third green stage	20.601
	SRR8316901	Third green stage	21.140
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.217
	SRR8316903	Complete white stage	0.060
	SRR8316902	Silver flowering stage	0.604
	SRR8316904	Silver flowering stage	1.279
	SRR8316905	Silver flowering stage	0.527
	SRR8316906	Gold flowering stage	0.186
	SRR8316907	Gold flowering stage	0.338
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	19.005
	SRR6706287	Light intensity 50%	18.547
	SRR6706288	Light intensity 20%	17.959
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.812
	CNS0095593	Slightly white alabastrum(diploid) 2	8.262
	CNS0095594	Slightly white alabastrum(diploid) 3	7.511
	CNS0095595	Whole white alabastrum(diploid) 2	65.364
	CNS0095596	Whole white alabastrum(diploid) 3	80.565
	CNS0095597	Whole white alabastrum(diploid) 4	110.078
	CNS0095598	Silvery flower (diploied) 1	3.962
	CNS0095599	Silvery flower (diploied) 2	11.287
	CNS0095600	Silvery flower (diploied) 3	1.565
	CNS0095601	Golden flower (diploid) 1	3.410
	CNS0095602	Golden flower (diploid) 2	0.670
	CNS0095603	Golden flower (diploid) 3	1.635
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.499
	CNS0095605	Slightly white alabastrum(tetraploid) 2	25.447
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.310
	CNS0095607	Whole white alabastrum(tetraploid) 1	105.562
	CNS0095608	Whole white alabastrum(tetraploid) 2	135.832
	CNS0095609	Whole white alabastrum(tetraploid) 3	50.596
	CNS0095610	Silvery flower (tetraploid) 1	1.640
	CNS0095611	Silvery flower (tetraploid) 2	4.753
	CNS0095612	Silvery flower (tetraploid) 3	13.193
	CNS0095613	Golden flower (tetraploid) 1	2.353
	CNS0095614	Golden flower (tetraploid) 2	0.687
	CNS0095615	Golden flower (tetraploid) 3	5.595
CRA001975	CRR073297	Stem 1	2.542
	CRR073298	Stem 2	1.199
	CRR073299	Stem 3	0.865
	CRR073300	Leaf 1	29.182
	CRR073301	Leaf 2	13.113
	CRR073302	Leaf 3	6.211
	CRR073303	Juvenile bud 1	23.525
	CRR073304	Juvenile bud 2	16.891
	CRR073305	Juvenile bud 3	1.935
	CRR073306	Third green 1	12.828
	CRR073307	Third green 2	12.110
	CRR073308	Third green 3	14.283
	CRR073309	Second white 1	0.448
	CRR073310	Second white 2	2.500
	CRR073311	Second white 3	2.170
	CRR073312	Silver flowering 1	10.342
	CRR073313	Silver flowering 2	14.072
	CRR073314	Silver flowering 3	6.944
	CRR073315	Gold flowering 1	7.449
	CRR073316	Gold flowering 2	3.203
	CRR073317	Gold flowering 3	1.464
	CRR073318	Tawny withering 1	12.490
	CRR073319	Tawny withering 2	10.051
	CRR073320	Tawny withering 3	8.936