Gene detail

Detail information of GWHGAAZE014829

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011025748.1	0	PREDICTED: indole-3-pyruvate monooxygenase YUCCA6-like [Populus euphratica]
Swissprot	tr\|Q8VZ59\|YUC6_ARATH	7E-163	Indole-3-pyruvate monooxygenase YUCCA6
trEMBL	tr\|B9HEU7\|B9HEU7_POPTR	0	Flavin-containing monooxygenase {ECO:0000256\|RuleBase:RU361177}
TAIR10	AT5G25620.2	3E-127	Flavin-binding monooxygenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	19870679	19872870	+
GWHAAZE00000004	mRNA	19870679	19872870	+
GWHAAZE00000004	exon	19870679	19871380	+
GWHAAZE00000004	exon	19871474	19871722	+
GWHAAZE00000004	exon	19872238	19872360	+
GWHAAZE00000004	exon	19872673	19872870	+
GWHAAZE00000004	CDS	19870679	19871380	+
GWHAAZE00000004	CDS	19871474	19871722	+
GWHAAZE00000004	CDS	19872238	19872360	+
GWHAAZE00000004	CDS	19872673	19872870	+

Transcript Sequence
>GWHTAAZE014843 AAAACATATCCACCCCGAGAAAGAATATTATCTTATCAAACCAACAATTATTTGCAGTTGAGCTCAAATGGGATGTATACAAAAACGATGAACTCGGAGCTAAAGTGTGTGTGGAGCCCCGGACCCATAATCATTGGTGCTGGACCATCGGGGCTAGCAACAGCTGCATGCCTTGAACGAAACGGGGTCCCCTTTTTGATCCTTGAGAAAGAAAGCTGTCTTGCATCACTATGGAAACTGAAAACGTATGACCGGCTCAAACTTCACCTCCCAAAGGAATCATGTCAACTACCTTATATGCCTTTCCCTCAAGAATTTCCACCATACCCAACAAAACAACAATTTGTAAATTACTTGGAGACATATGCTAACCGTTTTTCAATTGAGCCCATGTTTGGTGTGGAGGTTTGGCGAGCCAACTACGATGCTTCCATGGGGTTTTGGCGGGTTTGTGCCAATGACTCACAGATTTTGTGCCGATGGCTCATTGTTGCAACCGGGGAGAACGCGGTGCCGGCATTGCCAGAGATTGATGGGCTTGGAGATTTTAAGGGAAGGTTACTACACTCGAGCGGATATAAAAATGGAGCCGAGTTTAACGGAAGGAAGGTTTTGGTTGTGGGTTGTGGGAACTCGGGCATGGAGGTTAGTTTGGATCTATGTAATAGTGGCGCTCAAGTTTCTTTAGTAGTCAGACGTAAGTTGCATATACTGCCGAGAGAAGTGCTGGGTAGATCAACTTTTGGTCTTGCAACGAGGTTGATGAAGTGGTTTCCAGTAAGACTAGTTGATTGGTTTCTAGTGCTCTGTTCATGGCTGGTTTTTGGGGACATGAGTAGACTAGGGCTTACAAGACCTGAAATTGGTCCCCTCAAACTCAAGAACACTATTGGAAAAACCCCAGTTTTGGATGTTGGATCTATTGCCAAAATCAAGTCTGGTGAAATAAAGGTTGTTCACGGTATTCAAAGGTTCACATCCAACGGTGCAGAATTTGTGGATGGAAAAATCGAGGAATTTGAGTCAGTAATTCTAGCAACAGGTTATAGAAGCAATGTAGCATCATGGCTAAAGGAGGGATATTTCTCTAGCCAAACCGAGGGTAACCCAATAAATGAATTCCCCAGCAACTGGAAAGGCAAAAATGGACTGTACAGTGTGGGATTTACAGGTAAAGGCTTGTTTGGATCCTCGATTGATGCTCGCAAAATAGCAGATGATATTACAAGGCAATGGAAGTCTGATTTTAGCCCCAATGGTATGAACTACTAA

Network for GWHGAAZE014829

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13738.7	Pyr_redox_3	43	234	1.20E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11816	YUCCA	Metabolic pathways	map01100
K11816	YUCCA	Tryptophan metabolism	map00380

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0004499	molecular_function	N,N-dimethylaniline monooxygenase activity
GO:0050660	molecular_function	flavin adenine dinucleotide binding
GO:0050661	molecular_function	NADP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.433
	SRR3591706	second leaf	0.489
	SRR3591707	mature leaf	0.726
	SRR3591708	Shoot apex	1.079
	SRR3591709	Stem	1.255
	SRR3591710	White floral bud	12.427
	SRR3591711	White flower	18.559
	SRR3591712	Green floral bud	0.402
	SRR3591713	Yellow flower	4.818
SRP173429	SRR8316895	Juvenile bud stage	0.765
	SRR8316896	Juvenile bud stage	1.704
	SRR8316897	Juvenile bud stage	0.950
	SRR8316894	Third green stage	0.322
	SRR8316900	Third green stage	1.190
	SRR8316901	Third green stage	1.536
	SRR8316898	Complete white stage	6.729
	SRR8316899	Complete white stage	2.641
	SRR8316903	Complete white stage	7.649
	SRR8316902	Silver flowering stage	11.822
	SRR8316904	Silver flowering stage	20.696
	SRR8316905	Silver flowering stage	12.002
	SRR8316906	Gold flowering stage	27.978
	SRR8316907	Gold flowering stage	16.738
	SRR8316908	Gold flowering stage	14.665
SRP132670	SRR6706286	Control	0.739
	SRR6706287	Light intensity 50%	0.704
	SRR6706288	Light intensity 20%	0.692
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.328
	CNS0095593	Slightly white alabastrum(diploid) 2	1.784
	CNS0095594	Slightly white alabastrum(diploid) 3	1.052
	CNS0095595	Whole white alabastrum(diploid) 2	1.076
	CNS0095596	Whole white alabastrum(diploid) 3	0.847
	CNS0095597	Whole white alabastrum(diploid) 4	0.355
	CNS0095598	Silvery flower (diploied) 1	3.514
	CNS0095599	Silvery flower (diploied) 2	2.016
	CNS0095600	Silvery flower (diploied) 3	9.617
	CNS0095601	Golden flower (diploid) 1	1.842
	CNS0095602	Golden flower (diploid) 2	2.961
	CNS0095603	Golden flower (diploid) 3	3.707
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.928
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.687
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.840
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.791
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.496
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.772
	CNS0095610	Silvery flower (tetraploid) 1	9.469
	CNS0095611	Silvery flower (tetraploid) 2	9.281
	CNS0095612	Silvery flower (tetraploid) 3	11.942
	CNS0095613	Golden flower (tetraploid) 1	3.001
	CNS0095614	Golden flower (tetraploid) 2	3.591
	CNS0095615	Golden flower (tetraploid) 3	5.700
CRA001975	CRR073297	Stem 1	0.802
	CRR073298	Stem 2	0.337
	CRR073299	Stem 3	0.394
	CRR073300	Leaf 1	0.747
	CRR073301	Leaf 2	0.849
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.012
	CRR073304	Juvenile bud 2	0.240
	CRR073305	Juvenile bud 3	0.194
	CRR073306	Third green 1	19.501
	CRR073307	Third green 2	29.169
	CRR073308	Third green 3	17.095
	CRR073309	Second white 1	20.292
	CRR073310	Second white 2	22.037
	CRR073311	Second white 3	13.157
	CRR073312	Silver flowering 1	4.206
	CRR073313	Silver flowering 2	4.499
	CRR073314	Silver flowering 3	4.535
	CRR073315	Gold flowering 1	0.354
	CRR073316	Gold flowering 2	1.020
	CRR073317	Gold flowering 3	0.297
	CRR073318	Tawny withering 1	0.429
	CRR073319	Tawny withering 2	0.641
	CRR073320	Tawny withering 3	0.919