Gene detail

Detail information of GWHGAAZE014828

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008439058.1	0	PREDICTED: splicing factor 3B subunit 4 [Cucumis melo]
Swissprot	tr\|P42731\|PABP2_ARATH	2E-35	Polyadenylate-binding protein 2
trEMBL	tr\|M1A4T6\|M1A4T6_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400014744}
TAIR10	AT2G18510.1	2E-127	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	19861001	19866821	+
GWHAAZE00000004	mRNA	19861001	19866821	+
GWHAAZE00000004	exon	19861001	19861105	+
GWHAAZE00000004	exon	19861876	19861924	+
GWHAAZE00000004	exon	19862768	19862856	+
GWHAAZE00000004	exon	19862978	19863034	+
GWHAAZE00000004	exon	19863193	19863255	+
GWHAAZE00000004	exon	19863698	19863763	+
GWHAAZE00000004	exon	19864557	19864643	+
GWHAAZE00000004	exon	19865273	19865366	+
GWHAAZE00000004	exon	19866295	19866821	+
GWHAAZE00000004	CDS	19861001	19861105	+
GWHAAZE00000004	CDS	19861876	19861924	+
GWHAAZE00000004	CDS	19862768	19862856	+
GWHAAZE00000004	CDS	19862978	19863034	+
GWHAAZE00000004	CDS	19863193	19863255	+
GWHAAZE00000004	CDS	19863698	19863763	+
GWHAAZE00000004	CDS	19864557	19864643	+
GWHAAZE00000004	CDS	19865273	19865366	+
GWHAAZE00000004	CDS	19866295	19866821	+

Transcript Sequence
>GWHTAAZE014842 ATGACGACTAGAATAGCGCCGGGAGTAGGGGCGAACCTGCTAGGGCAACACTCAGCCGAGAGGAACCAAGATGCCACCGCCTACGTCGGCAATCTCGACCCTCAGGTAACCGAAGAATTACTATGGGAGTTGTTTGTTCAAGCAGGCCCTGTTGTTAACGTGTACGTCCCCAAAGATAGAGTCACTAATCTTCATCAAGGTTATGGATTTGTAGAATTTCGAAGTGAAGAAGATGCTGACTATGCAATAAAAGTGCTGAACATGATTAAACTGTATGGGAAGCCAATACGAGTGAATAAGGCATCACAAGATAAGAAGAGCTTGGATGTTGGAGCAAACCTATTTGTTGGAAATCTTGATCCTGATGTCGATGAGAAGCTTCTGTATGATACTTTCAGCGCGTTTGGAGTCATTGTTACAAATCCGAAGATAATGCGAGATCCTGACACAGGCAATTCCCGTGGTTTTGGGTTCATTAGCTATGATTCTTTTGAGGCATCAGATGCAGCTATTGAGGCAATGAATGGGCAATATCTTTGTAACCGCCAAATAACGGTATCCTATGCATACAAGAAGGACACAAAGGGGGAGCGTCATGGTACCCCAGCAGAGAGAGTTTTGGCAGCCAGCAATCCAGGTGCCCAGAAAAGCAGGCCCCACACGCTGTTTGCAAGCGGACCCCCTACACTGCCCAATGTGCAGGCCAATGGTACCATGGGTGCACCAGTCCCTCCACGGCCTTTTGCAAATGGCTCTGTTCCCTCGGGACCCATTCCAGCTCTCCGTCCACCACCACCACCACCGCAGGTCTTCCCGCCCATGCAAATGTCAGCACCACCACCATCTTGGCAGGGTCAGCCACAGCAACCACCCCCCATGCACCCACCACCGCCTCAATATCATCAGCAGTTTAGGCCGCCTCCTAACATGCCACCACCACCTCCTCCACAAGTAGCTCAGATGCTAAGCAGGCCTCCCCCACCACCAGCAGGGATGGCTGCTCCCCCTGTTTGGCGGCCACCACCACCTCCTCAGCAGCTCACCAGTGGACACCACCACCATTCTATGCAGCAGATGTCAATGCCGCCACCTCCCCCACTCAATGCTCCCCCACCACCACCTCCTGCATCAAGTTGA

Network for GWHGAAZE014828

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	28	97	1.80E-20
PF00076.23	RRM_1	114	184	3.10E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12831	SF3B4, SAP49	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	46.006
	SRR3591706	second leaf	36.867
	SRR3591707	mature leaf	36.999
	SRR3591708	Shoot apex	63.290
	SRR3591709	Stem	50.982
	SRR3591710	White floral bud	56.551
	SRR3591711	White flower	70.893
	SRR3591712	Green floral bud	52.131
	SRR3591713	Yellow flower	60.151
SRP173429	SRR8316895	Juvenile bud stage	32.843
	SRR8316896	Juvenile bud stage	46.778
	SRR8316897	Juvenile bud stage	19.421
	SRR8316894	Third green stage	14.320
	SRR8316900	Third green stage	41.459
	SRR8316901	Third green stage	41.211
	SRR8316898	Complete white stage	14.949
	SRR8316899	Complete white stage	58.775
	SRR8316903	Complete white stage	30.959
	SRR8316902	Silver flowering stage	27.538
	SRR8316904	Silver flowering stage	29.828
	SRR8316905	Silver flowering stage	14.216
	SRR8316906	Gold flowering stage	54.509
	SRR8316907	Gold flowering stage	56.861
	SRR8316908	Gold flowering stage	61.211
SRP132670	SRR6706286	Control	41.437
	SRR6706287	Light intensity 50%	39.534
	SRR6706288	Light intensity 20%	38.238
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	35.356
	CNS0095593	Slightly white alabastrum(diploid) 2	37.110
	CNS0095594	Slightly white alabastrum(diploid) 3	41.004
	CNS0095595	Whole white alabastrum(diploid) 2	28.570
	CNS0095596	Whole white alabastrum(diploid) 3	23.010
	CNS0095597	Whole white alabastrum(diploid) 4	29.861
	CNS0095598	Silvery flower (diploied) 1	48.644
	CNS0095599	Silvery flower (diploied) 2	45.629
	CNS0095600	Silvery flower (diploied) 3	66.018
	CNS0095601	Golden flower (diploid) 1	46.784
	CNS0095602	Golden flower (diploid) 2	62.819
	CNS0095603	Golden flower (diploid) 3	60.759
	CNS0095604	Slightly white alabastrum(tetraploid) 1	37.270
	CNS0095605	Slightly white alabastrum(tetraploid) 2	33.480
	CNS0095606	Slightly white alabastrum(tetraploid) 3	60.737
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.811
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.759
	CNS0095609	Whole white alabastrum(tetraploid) 3	40.780
	CNS0095610	Silvery flower (tetraploid) 1	68.195
	CNS0095611	Silvery flower (tetraploid) 2	65.087
	CNS0095612	Silvery flower (tetraploid) 3	68.505
	CNS0095613	Golden flower (tetraploid) 1	45.557
	CNS0095614	Golden flower (tetraploid) 2	58.412
	CNS0095615	Golden flower (tetraploid) 3	59.916
CRA001975	CRR073297	Stem 1	51.104
	CRR073298	Stem 2	46.683
	CRR073299	Stem 3	49.448
	CRR073300	Leaf 1	38.587
	CRR073301	Leaf 2	42.483
	CRR073302	Leaf 3	35.489
	CRR073303	Juvenile bud 1	34.554
	CRR073304	Juvenile bud 2	29.529
	CRR073305	Juvenile bud 3	46.424
	CRR073306	Third green 1	18.674
	CRR073307	Third green 2	24.197
	CRR073308	Third green 3	22.159
	CRR073309	Second white 1	32.658
	CRR073310	Second white 2	34.271
	CRR073311	Second white 3	32.888
	CRR073312	Silver flowering 1	30.783
	CRR073313	Silver flowering 2	27.955
	CRR073314	Silver flowering 3	28.228
	CRR073315	Gold flowering 1	43.596
	CRR073316	Gold flowering 2	47.679
	CRR073317	Gold flowering 3	43.899
	CRR073318	Tawny withering 1	43.431
	CRR073319	Tawny withering 2	32.619
	CRR073320	Tawny withering 3	44.351