Gene detail

Detail information of GWHGAAZE014827

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011101140.1	0	PREDICTED: splicing factor U2af large subunit B isoform X1 [Sesamum indicum]
Swissprot	tr\|Q9ZR40\|U2A2B_NICPL	0	Splicing factor U2af large subunit B
trEMBL	tr\|F6GWY2\|F6GWY2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB44468.1}
TAIR10	AT1G60900.1	4E-170	U2 snRNP auxilliary factor, large subunit, splicing factor

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	19840864	19846980	+
GWHAAZE00000004	mRNA	19840864	19846980	+
GWHAAZE00000004	exon	19840864	19840932	+
GWHAAZE00000004	exon	19841053	19841112	+
GWHAAZE00000004	exon	19842339	19842399	+
GWHAAZE00000004	exon	19842479	19842591	+
GWHAAZE00000004	exon	19843853	19844299	+
GWHAAZE00000004	exon	19845564	19845699	+
GWHAAZE00000004	exon	19846220	19846287	+
GWHAAZE00000004	exon	19846843	19846980	+
GWHAAZE00000004	CDS	19840864	19840932	+
GWHAAZE00000004	CDS	19841053	19841112	+
GWHAAZE00000004	CDS	19842339	19842399	+
GWHAAZE00000004	CDS	19842479	19842591	+
GWHAAZE00000004	CDS	19843853	19844299	+
GWHAAZE00000004	CDS	19845564	19845699	+
GWHAAZE00000004	CDS	19846220	19846287	+
GWHAAZE00000004	CDS	19846843	19846980	+

Transcript Sequence
>GWHTAAZE014841 ATGCTTTTCATTGGTTATTTGCAGTTCCCTGCTCTTCCTGTTATGCCAGTTCAGGCTATGACTCAACAGGCTACTAGACATGCTCGGCGGGTTTATGTTGGTGGACTTTCTCCCTCTGCAAACGAACAGTCCGTGGCTACCTTCTTTAGTCATGTTATGTCTGCAATTGGAGGAAACACTGCTGGTCCAGGGGATGCTGTTGTCAATGTTTATATAAACCACGAGAAGAAGTTTGCATTTGTGGAGATGAGATCTGTTGAGGAGGCCAGTAATGCCATGGCCTTAGATGGCATTATATTTGAGGGAGCGCCTGTAAAGGTTAGGAGACCAAGTGATTACAATCCTTCACTGGCTGCTACTCTTGGTCCAAGCCAACCGAACCCTAACCTGAACCTAGCTGCTGTTGGGCTAACACCGGGTTCAGCTGGTGGGCTCGAGGGTCCAGACCGTATTTTTGTGGGTGGGCTCCCATATTATTTCACAGAAGCTCAGATCAGGGAGCTACTAGAGTCTTTCGGGCCTCTTCGTGGTTTTGATTTAGTTAAGGACAGAGAAACTGGGAATTCAAAGGGATACGCATTCTGTGTCTATCAGGACCTATCGGTTACAGATATTGCTTGTGCGGCTCTTAATGGAATTAAAATGGGTGATAAAACTCTTACTGTTAGGCGTGCTAACCAGGGTGCTACCCAACCTAAGCCTGAGCAAGAGAGTGTTTTACTGCACGCACAGCAACAAATAGCATTGCAGAGGCTCATGTTACAACCTGCTTCAGTAGGCACCAAGGTTTTATGCTTAACTCAAGTGGTTAATGAGGAAGAGCTCAAAGATGACGAGGACTATGAAGACATTTTGGACGACATGAGAACGGAATGTGGAAAATTCGGTAATTTAGTGAACGTTGTCATCCCCCGTCCGAAACCAAATGGTGAACCATCACCAGGAGTTGGAAAGGTGTTCTTGGAATACACAGATGTGGAAAGTGCAACAAAAGCAAGAGGAGGGTTGAATGGAAGAAAATTTGGTGGGAATCAAGTTGTGGCTGTATTTTATCCAGAAAACAAGTTCTTCCAGCAGGAGTATGATGGTTAA

Network for GWHGAAZE014827

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	151	220	1.30E-17
PF00076.23	RRM_1	286	346	2.70E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12837	U2AF2	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0006397	biological_process	mRNA processing
GO:0005634	cellular_component	nucleus
GO:0003676	molecular_function	nucleic acid binding
GO:0003723	molecular_function	RNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	50.336
	SRR3591706	second leaf	32.540
	SRR3591707	mature leaf	43.909
	SRR3591708	Shoot apex	57.380
	SRR3591709	Stem	65.414
	SRR3591710	White floral bud	66.339
	SRR3591711	White flower	60.710
	SRR3591712	Green floral bud	44.205
	SRR3591713	Yellow flower	51.729
SRP173429	SRR8316895	Juvenile bud stage	42.026
	SRR8316896	Juvenile bud stage	70.478
	SRR8316897	Juvenile bud stage	33.978
	SRR8316894	Third green stage	24.571
	SRR8316900	Third green stage	47.065
	SRR8316901	Third green stage	51.410
	SRR8316898	Complete white stage	25.541
	SRR8316899	Complete white stage	52.843
	SRR8316903	Complete white stage	69.283
	SRR8316902	Silver flowering stage	41.411
	SRR8316904	Silver flowering stage	57.308
	SRR8316905	Silver flowering stage	25.202
	SRR8316906	Gold flowering stage	85.360
	SRR8316907	Gold flowering stage	107.257
	SRR8316908	Gold flowering stage	107.403
SRP132670	SRR6706286	Control	40.356
	SRR6706287	Light intensity 50%	49.217
	SRR6706288	Light intensity 20%	50.419
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	56.498
	CNS0095593	Slightly white alabastrum(diploid) 2	52.458
	CNS0095594	Slightly white alabastrum(diploid) 3	50.393
	CNS0095595	Whole white alabastrum(diploid) 2	39.551
	CNS0095596	Whole white alabastrum(diploid) 3	30.889
	CNS0095597	Whole white alabastrum(diploid) 4	36.475
	CNS0095598	Silvery flower (diploied) 1	63.135
	CNS0095599	Silvery flower (diploied) 2	52.510
	CNS0095600	Silvery flower (diploied) 3	32.005
	CNS0095601	Golden flower (diploid) 1	42.679
	CNS0095602	Golden flower (diploid) 2	33.491
	CNS0095603	Golden flower (diploid) 3	32.373
	CNS0095604	Slightly white alabastrum(tetraploid) 1	51.030
	CNS0095605	Slightly white alabastrum(tetraploid) 2	43.503
	CNS0095606	Slightly white alabastrum(tetraploid) 3	73.462
	CNS0095607	Whole white alabastrum(tetraploid) 1	41.084
	CNS0095608	Whole white alabastrum(tetraploid) 2	23.734
	CNS0095609	Whole white alabastrum(tetraploid) 3	44.084
	CNS0095610	Silvery flower (tetraploid) 1	80.343
	CNS0095611	Silvery flower (tetraploid) 2	41.214
	CNS0095612	Silvery flower (tetraploid) 3	81.857
	CNS0095613	Golden flower (tetraploid) 1	53.024
	CNS0095614	Golden flower (tetraploid) 2	58.657
	CNS0095615	Golden flower (tetraploid) 3	49.903
CRA001975	CRR073297	Stem 1	63.284
	CRR073298	Stem 2	56.310
	CRR073299	Stem 3	29.789
	CRR073300	Leaf 1	64.101
	CRR073301	Leaf 2	58.138
	CRR073302	Leaf 3	20.709
	CRR073303	Juvenile bud 1	25.472
	CRR073304	Juvenile bud 2	16.239
	CRR073305	Juvenile bud 3	29.747
	CRR073306	Third green 1	13.228
	CRR073307	Third green 2	9.350
	CRR073308	Third green 3	14.181
	CRR073309	Second white 1	7.928
	CRR073310	Second white 2	16.755
	CRR073311	Second white 3	13.552
	CRR073312	Silver flowering 1	12.950
	CRR073313	Silver flowering 2	18.548
	CRR073314	Silver flowering 3	20.929
	CRR073315	Gold flowering 1	16.851
	CRR073316	Gold flowering 2	26.933
	CRR073317	Gold flowering 3	8.844
	CRR073318	Tawny withering 1	33.165
	CRR073319	Tawny withering 2	48.593
	CRR073320	Tawny withering 3	42.471