Detail information of GWHGAAZE014826


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010649165.14.28883E-09PREDICTED: splicing factor U2af large subunit B isoform X2 [Vitis vinifera]
trEMBLtr|F6GWY2|F6GWY2_VITVI0.000000002Putative uncharacterized protein {ECO:0000313|EMBL:CCB44468.1}
TAIR10AT4G36690.20.003U2 snRNP auxilliary factor, large subunit, splicing factor

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1983499419840832+
GWHAAZE00000004mRNA1983499419840832+
GWHAAZE00000004exon1983499419835125+
GWHAAZE00000004exon1983584319835856+
GWHAAZE00000004exon1983832119838407+
GWHAAZE00000004exon1983873419838853+
GWHAAZE00000004exon1984072119840832+
GWHAAZE00000004CDS1983499419835125+
GWHAAZE00000004CDS1983584319835856+
GWHAAZE00000004CDS1983832119838407+
GWHAAZE00000004CDS1983873419838853+
GWHAAZE00000004CDS1984072119840832+
Transcript Sequence

Network for GWHGAAZE014826

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12837U2AF2 Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf39.837
SRR3591706second leaf27.562
SRR3591707mature leaf40.159
SRR3591708Shoot apex40.831
SRR3591709Stem49.298
SRR3591710White floral bud51.792
SRR3591711White flower46.667
SRR3591712Green floral bud31.850
SRR3591713Yellow flower38.781
SRP173429 SRR8316895Juvenile bud stage 37.053
SRR8316896Juvenile bud stage 58.361
SRR8316897Juvenile bud stage 25.456
SRR8316894Third green stage 18.904
SRR8316900Third green stage 40.606
SRR8316901Third green stage 48.766
SRR8316898Complete white stage 23.679
SRR8316899Complete white stage 46.350
SRR8316903Complete white stage 63.989
SRR8316902Silver flowering stage42.243
SRR8316904Silver flowering stage55.854
SRR8316905Silver flowering stage30.028
SRR8316906Gold flowering stage 79.703
SRR8316907Gold flowering stage 104.410
SRR8316908Gold flowering stage 89.295
SRP132670SRR6706286Control59.515
SRR6706287Light intensity 50%76.551
SRR6706288Light intensity 20%70.639
CNP0000432CNS0095592Slightly white alabastrum(diploid) 132.048
CNS0095593Slightly white alabastrum(diploid) 226.596
CNS0095594Slightly white alabastrum(diploid) 324.396
CNS0095595Whole white alabastrum(diploid) 224.980
CNS0095596Whole white alabastrum(diploid) 315.075
CNS0095597Whole white alabastrum(diploid) 419.946
CNS0095598Silvery flower (diploied) 143.383
CNS0095599Silvery flower (diploied) 236.700
CNS0095600Silvery flower (diploied) 328.220
CNS0095601Golden flower (diploid) 129.342
CNS0095602Golden flower (diploid) 227.735
CNS0095603Golden flower (diploid) 328.077
CNS0095604Slightly white alabastrum(tetraploid) 136.323
CNS0095605Slightly white alabastrum(tetraploid) 223.235
CNS0095606Slightly white alabastrum(tetraploid) 377.032
CNS0095607Whole white alabastrum(tetraploid) 128.850
CNS0095608Whole white alabastrum(tetraploid) 212.633
CNS0095609Whole white alabastrum(tetraploid) 343.375
CNS0095610Silvery flower (tetraploid) 194.178
CNS0095611Silvery flower (tetraploid) 240.112
CNS0095612Silvery flower (tetraploid) 362.896
CNS0095613Golden flower (tetraploid) 142.012
CNS0095614Golden flower (tetraploid) 260.945
CNS0095615Golden flower (tetraploid) 337.380
CRA001975CRR073297Stem 149.323
CRR073298Stem 249.764
CRR073299Stem 324.868
CRR073300Leaf 158.988
CRR073301Leaf 250.990
CRR073302Leaf 314.226
CRR073303Juvenile bud 115.739
CRR073304Juvenile bud 212.969
CRR073305Juvenile bud 323.606
CRR073306Third green 112.248
CRR073307Third green 27.421
CRR073308Third green 314.338
CRR073309Second white 16.196
CRR073310Second white 213.517
CRR073311Second white 38.183
CRR073312Silver flowering 110.726
CRR073313Silver flowering 215.931
CRR073314Silver flowering 313.689
CRR073315Gold flowering 18.503
CRR073316Gold flowering 218.687
CRR073317Gold flowering 36.666
CRR073318Tawny withering 116.366
CRR073319Tawny withering 218.582
CRR073320Tawny withering 317.548