Gene detail

Detail information of GWHGAAZE014816

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002525098.1	7.4645E-117	ubiquitin-conjugating enzyme m, putative [Ricinus communis]
Swissprot	tr\|Q9SDY5\|RCE1_ARATH	2E-109	NEDD8-conjugating enzyme Ubc12
trEMBL	tr\|B9SGH9\|B9SGH9_RICCO	3E-117	Ubiquitin-conjugating enzyme m, putative {ECO:0000313\|EMBL:EEF37225.1}
TAIR10	AT4G36800.2	2E-86	RUB1 conjugating enzyme 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	19558607	19565155	+
GWHAAZE00000004	mRNA	19558607	19565155	+
GWHAAZE00000004	exon	19558607	19558687	+
GWHAAZE00000004	exon	19563720	19563877	+
GWHAAZE00000004	exon	19564362	19564470	+
GWHAAZE00000004	exon	19564603	19564681	+
GWHAAZE00000004	exon	19564788	19564904	+
GWHAAZE00000004	exon	19565018	19565155	+
GWHAAZE00000004	five_prime_UTR	19558607	19558687	+
GWHAAZE00000004	five_prime_UTR	19563720	19563768	+
GWHAAZE00000004	CDS	19563769	19563877	+
GWHAAZE00000004	CDS	19564362	19564470	+
GWHAAZE00000004	CDS	19564603	19564681	+
GWHAAZE00000004	CDS	19564788	19564904	+
GWHAAZE00000004	CDS	19565018	19565155	+

Transcript Sequence
>GWHTAAZE014830 CCACCTTCACATTCTTGAGTTCCCTCACTTTCTCTCAATTCCTCTCTCTTACTAGTCATTATCCACACAGATACAAACTAGGACATTTGCATCGGTAGTTATTTAGTTTGTATAATTTTTCTAAGGAACCATGATTAGACTTTTCAAGGTAAAGGAAAAACAAAGAGAAGTGGCTGAAAATTCCAATGGGAAAGGCCCTGTCAAGAAGCAAACTGCTGGAGAACTGCGTCTGCATAAAGACATTAGCGAGCTGAACCTTCCATCGACGTGTGTTATATCATTTCCAAACGGAAAGGATGATTTGATGAACTTTGAGATATCGATTCGACCTGATGAAGGATATTATTTAGGAGGAACATTTTTATTTACCTTCCAAGTTTTCCCCATCTATCCACACGAGCCACCTAAGTTTAAGTGCAAGACAAAGGTCTATCACCCAAATATTGACCTGGAAGGGAACGTATGCCTCAACATATTACGGGAAGATTGGAAACCTGTCCTCAACATAAATACTGTCGTTTATGGGTTGTATCATCTTTTTACGGAACCGAATCACGCGGATCCCCTCAATCATGATGCAGCTGCAGTGTTGAGGGATAACCCAAAGGCATTTCAATCCAATGTGAAAAAGGCAATGCTCGGGGGGGTAGTGGGGCAGACAAACTTCTCGCGGTGTGTTTAA

Network for GWHGAAZE014816

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00179.27	UQ_con	33	168	6.70E-37

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	UBC

KEGG pathway

KO	Enzyme	pathway	mapID
K10579	UBE2M, UBC12	Ubiquitin mediated proteolysis	map04120

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.524
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	2.711
	SRR8316896	Juvenile bud stage	2.975
	SRR8316897	Juvenile bud stage	0.371
	SRR8316894	Third green stage	1.314
	SRR8316900	Third green stage	4.416
	SRR8316901	Third green stage	3.431
	SRR8316898	Complete white stage	1.033
	SRR8316899	Complete white stage	5.358
	SRR8316903	Complete white stage	1.666
	SRR8316902	Silver flowering stage	0.687
	SRR8316904	Silver flowering stage	2.149
	SRR8316905	Silver flowering stage	1.045
	SRR8316906	Gold flowering stage	3.221
	SRR8316907	Gold flowering stage	1.954
	SRR8316908	Gold flowering stage	0.876
SRP132670	SRR6706286	Control	4.481
	SRR6706287	Light intensity 50%	4.907
	SRR6706288	Light intensity 20%	5.731
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.364
	CNS0095593	Slightly white alabastrum(diploid) 2	5.398
	CNS0095594	Slightly white alabastrum(diploid) 3	4.805
	CNS0095595	Whole white alabastrum(diploid) 2	2.364
	CNS0095596	Whole white alabastrum(diploid) 3	5.272
	CNS0095597	Whole white alabastrum(diploid) 4	3.258
	CNS0095598	Silvery flower (diploied) 1	3.396
	CNS0095599	Silvery flower (diploied) 2	3.970
	CNS0095600	Silvery flower (diploied) 3	2.992
	CNS0095601	Golden flower (diploid) 1	3.361
	CNS0095602	Golden flower (diploid) 2	2.003
	CNS0095603	Golden flower (diploid) 3	2.167
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.493
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.026
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.582
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.069
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.901
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.255
	CNS0095610	Silvery flower (tetraploid) 1	0.671
	CNS0095611	Silvery flower (tetraploid) 2	0.786
	CNS0095612	Silvery flower (tetraploid) 3	1.218
	CNS0095613	Golden flower (tetraploid) 1	1.131
	CNS0095614	Golden flower (tetraploid) 2	1.657
	CNS0095615	Golden flower (tetraploid) 3	0.749
CRA001975	CRR073297	Stem 1	2.114
	CRR073298	Stem 2	2.375
	CRR073299	Stem 3	2.002
	CRR073300	Leaf 1	2.676
	CRR073301	Leaf 2	2.783
	CRR073302	Leaf 3	1.011
	CRR073303	Juvenile bud 1	0.594
	CRR073304	Juvenile bud 2	0.515
	CRR073305	Juvenile bud 3	1.206
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.057
	CRR073309	Second white 1	0.233
	CRR073310	Second white 2	0.782
	CRR073311	Second white 3	0.484
	CRR073312	Silver flowering 1	0.563
	CRR073313	Silver flowering 2	0.437
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.889
	CRR073316	Gold flowering 2	0.640
	CRR073317	Gold flowering 3	0.298
	CRR073318	Tawny withering 1	0.512
	CRR073319	Tawny withering 2	1.493
	CRR073320	Tawny withering 3	0.165