Detail information of GWHGAAZE014814


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADY38579.19.5492E-126allene oxide cyclase [Camellia sinensis]
Swissprottr|Q93ZC5|AOC4_ARATH7E-96Allene oxide cyclase 4, chloroplastic (Precursor)
trEMBLtr|F1DRC0|F1DRC0_CAMSI4E-126Allene oxide cyclase {ECO:0000313|EMBL:ADY38579.1}
TAIR10AT1G13280.11E-67allene oxide cyclase 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1953075319532427+
GWHAAZE00000004mRNA1953075319532427+
GWHAAZE00000004exon1953075319530978+
GWHAAZE00000004exon1953119519531316+
GWHAAZE00000004exon1953192419532427+
GWHAAZE00000004CDS1953075319530978+
GWHAAZE00000004CDS1953119519531316+
GWHAAZE00000004CDS1953192419532325+
GWHAAZE00000004three_prime_UTR1953232619532427+
Transcript Sequence

Network for GWHGAAZE014814

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06351.12Allene_ox_cyc742471.70E-97
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10525AOC Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
alpha-Linolenic acid metabolismmap00592

Gene Ontology

GO term OntologyName
GO:0009695biological_processjasmonic acid biosynthetic process
GO:0016853molecular_functionisomerase activity
GO:0046423molecular_functionallene-oxide cyclase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf159.421
SRR3591706second leaf363.573
SRR3591707mature leaf258.647
SRR3591708Shoot apex278.125
SRR3591709Stem90.488
SRR3591710White floral bud200.254
SRR3591711White flower119.397
SRR3591712Green floral bud236.977
SRR3591713Yellow flower19.802
SRP173429 SRR8316895Juvenile bud stage 255.605
SRR8316896Juvenile bud stage 255.839
SRR8316897Juvenile bud stage 176.401
SRR8316894Third green stage 107.457
SRR8316900Third green stage 234.831
SRR8316901Third green stage 249.944
SRR8316898Complete white stage 37.165
SRR8316899Complete white stage 303.879
SRR8316903Complete white stage 115.405
SRR8316902Silver flowering stage10.286
SRR8316904Silver flowering stage12.238
SRR8316905Silver flowering stage3.458
SRR8316906Gold flowering stage 6.454
SRR8316907Gold flowering stage 11.041
SRR8316908Gold flowering stage 17.779
SRP132670SRR6706286Control290.631
SRR6706287Light intensity 50%278.661
SRR6706288Light intensity 20%273.184
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1209.512
CNS0095593Slightly white alabastrum(diploid) 2218.238
CNS0095594Slightly white alabastrum(diploid) 3184.826
CNS0095595Whole white alabastrum(diploid) 2136.777
CNS0095596Whole white alabastrum(diploid) 379.454
CNS0095597Whole white alabastrum(diploid) 4102.499
CNS0095598Silvery flower (diploied) 1256.693
CNS0095599Silvery flower (diploied) 2268.486
CNS0095600Silvery flower (diploied) 388.675
CNS0095601Golden flower (diploid) 1231.692
CNS0095602Golden flower (diploid) 2180.884
CNS0095603Golden flower (diploid) 3171.903
CNS0095604Slightly white alabastrum(tetraploid) 1201.635
CNS0095605Slightly white alabastrum(tetraploid) 2171.317
CNS0095606Slightly white alabastrum(tetraploid) 3413.967
CNS0095607Whole white alabastrum(tetraploid) 1113.022
CNS0095608Whole white alabastrum(tetraploid) 255.949
CNS0095609Whole white alabastrum(tetraploid) 3121.428
CNS0095610Silvery flower (tetraploid) 127.764
CNS0095611Silvery flower (tetraploid) 264.742
CNS0095612Silvery flower (tetraploid) 315.399
CNS0095613Golden flower (tetraploid) 115.478
CNS0095614Golden flower (tetraploid) 226.521
CNS0095615Golden flower (tetraploid) 38.258
CRA001975CRR073297Stem 1275.810
CRR073298Stem 2259.916
CRR073299Stem 3362.862
CRR073300Leaf 1253.577
CRR073301Leaf 2262.271
CRR073302Leaf 3264.670
CRR073303Juvenile bud 1303.128
CRR073304Juvenile bud 2196.280
CRR073305Juvenile bud 3422.340
CRR073306Third green 116.383
CRR073307Third green 230.878
CRR073308Third green 334.207
CRR073309Second white 17.882
CRR073310Second white 24.877
CRR073311Second white 31.698
CRR073312Silver flowering 11.625
CRR073313Silver flowering 25.430
CRR073314Silver flowering 36.096
CRR073315Gold flowering 1113.136
CRR073316Gold flowering 2143.323
CRR073317Gold flowering 3120.984
CRR073318Tawny withering 1145.915
CRR073319Tawny withering 2291.399
CRR073320Tawny withering 3129.034