Detail information of GWHGAAZE014757


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009777779.10PREDICTED: ATP synthase subunit beta, mitochondrial [Nicotiana sylvestris]
Swissprottr|P17614|ATPBM_NICPL0ATP synthase subunit beta, mitochondrial (Precursor)
trEMBLtr|M1D096|M1D096_SOLTU0ATP synthase subunit beta {ECO:0000256|RuleBase:RU003553}
TAIR10AT5G08680.10ATP synthase alpha/beta family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1822791318232748-
GWHAAZE00000004mRNA1822791318232748-
GWHAAZE00000004exon1822791318228026-
GWHAAZE00000004exon1822836818228679-
GWHAAZE00000004exon1822889618229120-
GWHAAZE00000004exon1822921718229375-
GWHAAZE00000004exon1822949218229595-
GWHAAZE00000004exon1822968218229799-
GWHAAZE00000004exon1823013418230222-
GWHAAZE00000004exon1823034318230418-
GWHAAZE00000004exon1823232618232748-
GWHAAZE00000004CDS1823232618232748-
GWHAAZE00000004CDS1823034318230418-
GWHAAZE00000004CDS1823013418230222-
GWHAAZE00000004CDS1822968218229799-
GWHAAZE00000004CDS1822949218229595-
GWHAAZE00000004CDS1822921718229375-
GWHAAZE00000004CDS1822889618229120-
GWHAAZE00000004CDS1822836818228679-
GWHAAZE00000004CDS1822791318228026-
Transcript Sequence

Network for GWHGAAZE014757

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF11421.9Synthase_beta1381.90E-05
PF02874.24ATP-synt_ab_N801421.00E-17
PF00006.26ATP-synt_ab1944152.00E-60
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02133ATPeF1B, ATP5B, ATP2 Metabolic pathways map01100
Oxidative phosphorylationmap00190
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0006754biological_processATP biosynthetic process
GO:0015986biological_processATP synthesis coupled proton transport
GO:0046034biological_processATP metabolic process
GO:1902600biological_processproton transmembrane transport
GO:0000275cellular_componentmitochondrial proton-transporting ATP synthase complex, catalytic sector F(1)
GO:0045261cellular_componentproton-transporting ATP synthase complex, catalytic core F(1)
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
GO:0046933molecular_functionproton-transporting ATP synthase activity, rotational mechanism

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.483
SRR3591706second leaf0.057
SRR3591707mature leaf0.131
SRR3591708Shoot apex0.249
SRR3591709Stem0.293
SRR3591710White floral bud2.438
SRR3591711White flower0.570
SRR3591712Green floral bud89.046
SRR3591713Yellow flower0.701
SRP173429 SRR8316895Juvenile bud stage 24.562
SRR8316896Juvenile bud stage 98.325
SRR8316897Juvenile bud stage 43.905
SRR8316894Third green stage 38.726
SRR8316900Third green stage 137.021
SRR8316901Third green stage 151.415
SRR8316898Complete white stage 1.061
SRR8316899Complete white stage 3.621
SRR8316903Complete white stage 2.115
SRR8316902Silver flowering stage0.201
SRR8316904Silver flowering stage0.704
SRR8316905Silver flowering stage0.885
SRR8316906Gold flowering stage 1.093
SRR8316907Gold flowering stage 1.091
SRR8316908Gold flowering stage 0.709
SRP132670SRR6706286Control56.695
SRR6706287Light intensity 50%50.578
SRR6706288Light intensity 20%43.765
CNP0000432CNS0095592Slightly white alabastrum(diploid) 185.633
CNS0095593Slightly white alabastrum(diploid) 259.146
CNS0095594Slightly white alabastrum(diploid) 3110.019
CNS0095595Whole white alabastrum(diploid) 291.936
CNS0095596Whole white alabastrum(diploid) 3120.535
CNS0095597Whole white alabastrum(diploid) 473.584
CNS0095598Silvery flower (diploied) 10.574
CNS0095599Silvery flower (diploied) 21.739
CNS0095600Silvery flower (diploied) 33.751
CNS0095601Golden flower (diploid) 10.785
CNS0095602Golden flower (diploid) 22.080
CNS0095603Golden flower (diploid) 31.916
CNS0095604Slightly white alabastrum(tetraploid) 1140.943
CNS0095605Slightly white alabastrum(tetraploid) 2129.610
CNS0095606Slightly white alabastrum(tetraploid) 30.254
CNS0095607Whole white alabastrum(tetraploid) 1129.294
CNS0095608Whole white alabastrum(tetraploid) 2119.112
CNS0095609Whole white alabastrum(tetraploid) 3110.923
CNS0095610Silvery flower (tetraploid) 10.280
CNS0095611Silvery flower (tetraploid) 20.512
CNS0095612Silvery flower (tetraploid) 30.623
CNS0095613Golden flower (tetraploid) 10.264
CNS0095614Golden flower (tetraploid) 20.262
CNS0095615Golden flower (tetraploid) 30.167
CRA001975CRR073297Stem 139.177
CRR073298Stem 252.546
CRR073299Stem 332.499
CRR073300Leaf 166.374
CRR073301Leaf 275.311
CRR073302Leaf 359.964
CRR073303Juvenile bud 134.574
CRR073304Juvenile bud 221.595
CRR073305Juvenile bud 35.959
CRR073306Third green 11.914
CRR073307Third green 22.409
CRR073308Third green 31.557
CRR073309Second white 11.864
CRR073310Second white 21.855
CRR073311Second white 31.427
CRR073312Silver flowering 10.756
CRR073313Silver flowering 22.860
CRR073314Silver flowering 31.646
CRR073315Gold flowering 14.316
CRR073316Gold flowering 24.853
CRR073317Gold flowering 33.029
CRR073318Tawny withering 11.491
CRR073319Tawny withering 23.494
CRR073320Tawny withering 31.294