Detail information of GWHGAAZE014749


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011097151.10PREDICTED: eukaryotic translation initiation factor 5-like [Sesamum indicum]
Swissprottr|P48724|IF5_PHAVU0Eukaryotic translation initiation factor 5
trEMBLtr|F6HSM8|F6HSM8_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB57669.1}
TAIR10AT1G77840.11E-146Translation initiation factor IF2/IF5

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1799259517993944-
GWHAAZE00000004mRNA1799259517993944-
GWHAAZE00000004exon1799312217993944-
GWHAAZE00000004exon1799259517993085-
GWHAAZE00000004CDS1799312217993944-
GWHAAZE00000004CDS1799259517993085-
Transcript Sequence

Network for GWHGAAZE014749

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01873.18eIF-5_eIF-2B111273.80E-36
PF02020.19W23594376.00E-22
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03262EIF5 RNA transport map03013
Apoptosis - flymap04214

Gene Ontology

GO term OntologyName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf97.779
SRR3591706second leaf64.066
SRR3591707mature leaf57.486
SRR3591708Shoot apex82.754
SRR3591709Stem97.579
SRR3591710White floral bud114.784
SRR3591711White flower177.214
SRR3591712Green floral bud122.389
SRR3591713Yellow flower197.045
SRP173429 SRR8316895Juvenile bud stage 92.695
SRR8316896Juvenile bud stage 136.222
SRR8316897Juvenile bud stage 87.286
SRR8316894Third green stage 37.052
SRR8316900Third green stage 141.405
SRR8316901Third green stage 140.466
SRR8316898Complete white stage 48.363
SRR8316899Complete white stage 122.018
SRR8316903Complete white stage 84.033
SRR8316902Silver flowering stage65.616
SRR8316904Silver flowering stage72.377
SRR8316905Silver flowering stage42.741
SRR8316906Gold flowering stage 147.702
SRR8316907Gold flowering stage 152.000
SRR8316908Gold flowering stage 136.687
SRP132670SRR6706286Control109.977
SRR6706287Light intensity 50%108.783
SRR6706288Light intensity 20%109.112
CNP0000432CNS0095592Slightly white alabastrum(diploid) 161.198
CNS0095593Slightly white alabastrum(diploid) 269.041
CNS0095594Slightly white alabastrum(diploid) 352.353
CNS0095595Whole white alabastrum(diploid) 259.126
CNS0095596Whole white alabastrum(diploid) 361.069
CNS0095597Whole white alabastrum(diploid) 449.420
CNS0095598Silvery flower (diploied) 163.317
CNS0095599Silvery flower (diploied) 2127.662
CNS0095600Silvery flower (diploied) 3175.412
CNS0095601Golden flower (diploid) 1170.206
CNS0095602Golden flower (diploid) 2196.677
CNS0095603Golden flower (diploid) 3197.373
CNS0095604Slightly white alabastrum(tetraploid) 181.373
CNS0095605Slightly white alabastrum(tetraploid) 268.910
CNS0095606Slightly white alabastrum(tetraploid) 3116.299
CNS0095607Whole white alabastrum(tetraploid) 148.432
CNS0095608Whole white alabastrum(tetraploid) 246.932
CNS0095609Whole white alabastrum(tetraploid) 3112.820
CNS0095610Silvery flower (tetraploid) 1194.502
CNS0095611Silvery flower (tetraploid) 2202.144
CNS0095612Silvery flower (tetraploid) 3203.951
CNS0095613Golden flower (tetraploid) 1197.999
CNS0095614Golden flower (tetraploid) 2211.709
CNS0095615Golden flower (tetraploid) 3216.690
CRA001975CRR073297Stem 192.520
CRR073298Stem 291.507
CRR073299Stem 382.152
CRR073300Leaf 1130.586
CRR073301Leaf 2113.711
CRR073302Leaf 3100.963
CRR073303Juvenile bud 197.623
CRR073304Juvenile bud 2122.982
CRR073305Juvenile bud 3114.168
CRR073306Third green 1111.434
CRR073307Third green 291.840
CRR073308Third green 397.353
CRR073309Second white 194.231
CRR073310Second white 286.736
CRR073311Second white 391.097
CRR073312Silver flowering 187.218
CRR073313Silver flowering 293.997
CRR073314Silver flowering 383.860
CRR073315Gold flowering 144.466
CRR073316Gold flowering 275.126
CRR073317Gold flowering 337.143
CRR073318Tawny withering 195.313
CRR073319Tawny withering 280.734
CRR073320Tawny withering 381.171