Gene detail

Detail information of GWHGAAZE014733

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011076481.1	1.457E-120	PREDICTED: 37S ribosomal protein S9, mitochondrial, partial [Sesamum indicum]
Swissprot	tr\|P82278\|RR9_SPIOL	2E-28	30S ribosomal protein S9, chloroplastic (Precursor; Fragment)
trEMBL	tr\|B9RIU9\|B9RIU9_RICCO	2E-120	Ribosomal protein S9, putative {ECO:0000313\|EMBL:EEF49071.1}
TAIR10	AT3G49080.1	2E-85	Ribosomal protein S5 domain 2-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	17664893	17666546	+
GWHAAZE00000004	mRNA	17664893	17666546	+
GWHAAZE00000004	exon	17664893	17665280	+
GWHAAZE00000004	exon	17665944	17666024	+
GWHAAZE00000004	exon	17666130	17666546	+
GWHAAZE00000004	CDS	17664893	17665280	+
GWHAAZE00000004	CDS	17665944	17666024	+
GWHAAZE00000004	CDS	17666130	17666221	+
GWHAAZE00000004	three_prime_UTR	17666222	17666546	+

Transcript Sequence
>GWHTAAZE014747 ATGCTAGACAGTTTGATGGCCCTGAAGGACCTGGACGATGTCCAAGGGTTGCCCCCTCTTAGTGAAATAGAAGACATGCGCTATGAAAAGAATACAAGAAAATCCACGAGGGCAGAAATAGAGCGGCAGAAACAGGAGGAAGTTGCCAAATCACGTGTGAGACAAGTAGACACAAAAGGAAGAGCTTACGGGACGGGGAGGAGGAAATGCAGTATAGCCCGTGTCTGGATTCAACCTGGGGACGGTAAATTTGTAGTGAATGACAAACAGTTTGATGTGTATTTCCCAATGCTAGATCAACGTGCTGCTCTTCTTCGACCTTTCTCCGAGACAAAGACCTTGGGTCTTTGGGATGTCAGTTGTACTGTGAAGGGTGGTGGCTTTTCAGGTCAAGTTGGGGCTGTACGTCTAGGTATCAGCAGGGCTTTGCAAAACTGGGAACCAGATTTGCGCCCCCCTTTGAGAGAAGCTGGTTTCTTGACAAGGGACTCGAGGGTGGTGGAAAGGAAAAAACCTGGAAAAGCAAAAGCAAGAAAGAGCTTCCAGTGGGTCAAGCGTTGATGCAAGCCTTTTTATTTTGGCACAATAAGTTGTGGATACTCATTTAAACTAGCCTGTAGCTTGAAAAGGCCCAACAAATTTACGCACTTGGATTGCAGTTTAGCCATAGCTATTGAAGATTTTGTAGACCAGAAAAAGGACTAGGAAAAACCTCCATAATTTTTTTTTTGTGTCAACTTGAATGGTTTTCTCCATCTGTTTCATGCATAAACTCATTGGTGATTAATTGAGCTGTTATGGGAATGTGATTATTCTTGAACATGTTATTGTATTTGGATCATCTTCTGTAGACAGACTGTTTCGATAATATACATTTATTTGTTAA

Network for GWHGAAZE014733

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00380.20	Ribosomal_S9	66	186	9.60E-49

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02996	RP-S9, MRPS9, rpsI	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.191
	SRR3591706	second leaf	12.266
	SRR3591707	mature leaf	10.024
	SRR3591708	Shoot apex	31.987
	SRR3591709	Stem	17.532
	SRR3591710	White floral bud	16.136
	SRR3591711	White flower	32.632
	SRR3591712	Green floral bud	29.182
	SRR3591713	Yellow flower	19.919
SRP173429	SRR8316895	Juvenile bud stage	25.739
	SRR8316896	Juvenile bud stage	36.076
	SRR8316897	Juvenile bud stage	14.835
	SRR8316894	Third green stage	11.749
	SRR8316900	Third green stage	35.749
	SRR8316901	Third green stage	29.509
	SRR8316898	Complete white stage	6.891
	SRR8316899	Complete white stage	28.915
	SRR8316903	Complete white stage	10.937
	SRR8316902	Silver flowering stage	7.894
	SRR8316904	Silver flowering stage	8.112
	SRR8316905	Silver flowering stage	4.351
	SRR8316906	Gold flowering stage	15.011
	SRR8316907	Gold flowering stage	15.336
	SRR8316908	Gold flowering stage	13.768
SRP132670	SRR6706286	Control	22.895
	SRR6706287	Light intensity 50%	23.585
	SRR6706288	Light intensity 20%	26.373
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.062
	CNS0095593	Slightly white alabastrum(diploid) 2	40.052
	CNS0095594	Slightly white alabastrum(diploid) 3	47.958
	CNS0095595	Whole white alabastrum(diploid) 2	24.620
	CNS0095596	Whole white alabastrum(diploid) 3	27.263
	CNS0095597	Whole white alabastrum(diploid) 4	22.706
	CNS0095598	Silvery flower (diploied) 1	23.630
	CNS0095599	Silvery flower (diploied) 2	22.187
	CNS0095600	Silvery flower (diploied) 3	18.370
	CNS0095601	Golden flower (diploid) 1	19.008
	CNS0095602	Golden flower (diploid) 2	15.363
	CNS0095603	Golden flower (diploid) 3	14.691
	CNS0095604	Slightly white alabastrum(tetraploid) 1	31.074
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.508
	CNS0095606	Slightly white alabastrum(tetraploid) 3	36.279
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.954
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.061
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.185
	CNS0095610	Silvery flower (tetraploid) 1	19.210
	CNS0095611	Silvery flower (tetraploid) 2	14.752
	CNS0095612	Silvery flower (tetraploid) 3	14.568
	CNS0095613	Golden flower (tetraploid) 1	12.480
	CNS0095614	Golden flower (tetraploid) 2	16.348
	CNS0095615	Golden flower (tetraploid) 3	8.208
CRA001975	CRR073297	Stem 1	34.752
	CRR073298	Stem 2	30.963
	CRR073299	Stem 3	32.129
	CRR073300	Leaf 1	26.415
	CRR073301	Leaf 2	32.019
	CRR073302	Leaf 3	24.567
	CRR073303	Juvenile bud 1	26.042
	CRR073304	Juvenile bud 2	16.392
	CRR073305	Juvenile bud 3	23.319
	CRR073306	Third green 1	5.062
	CRR073307	Third green 2	4.842
	CRR073308	Third green 3	4.863
	CRR073309	Second white 1	10.827
	CRR073310	Second white 2	12.224
	CRR073311	Second white 3	9.459
	CRR073312	Silver flowering 1	10.442
	CRR073313	Silver flowering 2	7.684
	CRR073314	Silver flowering 3	13.246
	CRR073315	Gold flowering 1	14.867
	CRR073316	Gold flowering 2	14.484
	CRR073317	Gold flowering 3	13.142
	CRR073318	Tawny withering 1	29.411
	CRR073319	Tawny withering 2	21.192
	CRR073320	Tawny withering 3	29.443